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TEX13B (testis expressed 13B)

Identity

Alias_namestestis expressed sequence 13B
Alias_symbol (synonym)TSGA5
TGC3B
Other alias
HGNC (Hugo) TEX13B
LocusID (NCBI) 56156
Atlas_Id 74628
Location Xq22.3  [Link to chromosome band Xq22]
Location_base_pair Starts at 107980864 and ends at 107982370 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TEX13B   11736
Cards
Entrez_Gene (NCBI)TEX13B  56156  testis expressed 13B
AliasesTGC3B; TSGA5
GeneCards (Weizmann)TEX13B
Ensembl hg19 (Hinxton)ENSG00000170925 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170925 [Gene_View]  chrX:107980864-107982370 [Contig_View]  TEX13B [Vega]
ICGC DataPortalENSG00000170925
TCGA cBioPortalTEX13B
AceView (NCBI)TEX13B
Genatlas (Paris)TEX13B
WikiGenes56156
SOURCE (Princeton)TEX13B
Genetics Home Reference (NIH)TEX13B
Genomic and cartography
GoldenPath hg38 (UCSC)TEX13B  -     chrX:107980864-107982370 -  Xq22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX13B  -     Xq22.3   [Description]    (hg19-Feb_2009)
EnsemblTEX13B - Xq22.3 [CytoView hg19]  TEX13B - Xq22.3 [CytoView hg38]
Mapping of homologs : NCBITEX13B [Mapview hg19]  TEX13B [Mapview hg38]
OMIM300313   
Gene and transcription
Genbank (Entrez)AF285598 BC150140 BC160037
RefSeq transcript (Entrez)NM_031273
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TEX13B
Cluster EST : UnigeneHs.333130 [ NCBI ]
CGAP (NCI)Hs.333130
Alternative Splicing GalleryENSG00000170925
Gene ExpressionTEX13B [ NCBI-GEO ]   TEX13B [ EBI - ARRAY_EXPRESS ]   TEX13B [ SEEK ]   TEX13B [ MEM ]
Gene Expression Viewer (FireBrowse)TEX13B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56156
GTEX Portal (Tissue expression)TEX13B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXU2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXU2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXU2
Splice isoforms : SwissVarQ9BXU2
PhosPhoSitePlusQ9BXU2
Domains : Interpro (EBI)TEX13   
Domain families : Pfam (Sanger)TEX13 (PF15186)   
Domain families : Pfam (NCBI)pfam15186   
Conserved Domain (NCBI)TEX13B
DMDM Disease mutations56156
Blocks (Seattle)TEX13B
SuperfamilyQ9BXU2
Human Protein AtlasENSG00000170925
Peptide AtlasQ9BXU2
HPRD02258
IPIIPI00010371   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXU2
IntAct (EBI)Q9BXU2
FunCoupENSG00000170925
BioGRIDTEX13B
STRING (EMBL)TEX13B
ZODIACTEX13B
Ontologies - Pathways
QuickGOQ9BXU2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTEX13B
Atlas of Cancer Signalling NetworkTEX13B
Wikipedia pathwaysTEX13B
Orthology - Evolution
OrthoDB56156
GeneTree (enSembl)ENSG00000170925
Phylogenetic Trees/Animal Genes : TreeFamTEX13B
HOVERGENQ9BXU2
HOGENOMQ9BXU2
Homologs : HomoloGeneTEX13B
Homology/Alignments : Family Browser (UCSC)TEX13B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX13B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX13B
dbVarTEX13B
ClinVarTEX13B
1000_GenomesTEX13B 
Exome Variant ServerTEX13B
ExAC (Exome Aggregation Consortium)TEX13B (select the gene name)
Genetic variants : HAPMAP56156
Genomic Variants (DGV)TEX13B [DGVbeta]
DECIPHERTEX13B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX13B 
Mutations
ICGC Data PortalTEX13B 
TCGA Data PortalTEX13B 
Broad Tumor PortalTEX13B
OASIS PortalTEX13B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEX13B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTEX13B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch TEX13B
DgiDB (Drug Gene Interaction Database)TEX13B
DoCM (Curated mutations)TEX13B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEX13B (select a term)
intoGenTEX13B
Cancer3DTEX13B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300313   
Orphanet
MedgenTEX13B
Genetic Testing Registry TEX13B
NextProtQ9BXU2 [Medical]
TSGene56156
GENETestsTEX13B
Target ValidationTEX13B
Huge Navigator TEX13B [HugePedia]
snp3D : Map Gene to Disease56156
BioCentury BCIQTEX13B
ClinGenTEX13B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56156
Chemical/Pharm GKB GenePA36453
Clinical trialTEX13B
Miscellaneous
canSAR (ICR)TEX13B (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEX13B
EVEXTEX13B
GoPubMedTEX13B
iHOPTEX13B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:45:16 CEST 2017

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