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TEX13B (testis expressed 13B)

Identity

Alias (NCBI)TGC3B
TSGA5
HGNC (Hugo) TEX13B
HGNC Alias symbTSGA5
TGC3B
HGNC Previous nametestis expressed sequence 13B
LocusID (NCBI) 56156
Atlas_Id 74628
Location Xq22.3  [Link to chromosome band Xq22]
Location_base_pair Starts at 107980864 and ends at 107982370 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TEX13B   11736
Cards
Entrez_Gene (NCBI)TEX13B    testis expressed 13B
AliasesTGC3B; TSGA5
GeneCards (Weizmann)TEX13B
Ensembl hg19 (Hinxton)ENSG00000170925 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170925 [Gene_View]  ENSG00000170925 [Sequence]  chrX:107980864-107982370 [Contig_View]  TEX13B [Vega]
ICGC DataPortalENSG00000170925
TCGA cBioPortalTEX13B
AceView (NCBI)TEX13B
Genatlas (Paris)TEX13B
SOURCE (Princeton)TEX13B
Genetics Home Reference (NIH)TEX13B
Genomic and cartography
GoldenPath hg38 (UCSC)TEX13B  -     chrX:107980864-107982370 -  Xq22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX13B  -     Xq22.3   [Description]    (hg19-Feb_2009)
GoldenPathTEX13B - Xq22.3 [CytoView hg19]  TEX13B - Xq22.3 [CytoView hg38]
ImmunoBaseENSG00000170925
Genome Data Viewer NCBITEX13B [Mapview hg19]  
OMIM300313   
Gene and transcription
Genbank (Entrez)AF285598 BC150140
RefSeq transcript (Entrez)NM_031273
Consensus coding sequences : CCDS (NCBI)TEX13B
Gene ExpressionTEX13B [ NCBI-GEO ]   TEX13B [ EBI - ARRAY_EXPRESS ]   TEX13B [ SEEK ]   TEX13B [ MEM ]
Gene Expression Viewer (FireBrowse)TEX13B [ Firebrowse - Broad ]
GenevisibleExpression of TEX13B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56156
GTEX Portal (Tissue expression)TEX13B
Human Protein AtlasENSG00000170925-TEX13B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXU2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXU2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXU2
PhosPhoSitePlusQ9BXU2
Domains : Interpro (EBI)TEX13   
Domain families : Pfam (Sanger)TEX13 (PF15186)   
Domain families : Pfam (NCBI)pfam15186   
Conserved Domain (NCBI)TEX13B
SuperfamilyQ9BXU2
AlphaFold pdb e-kbQ9BXU2   
Human Protein Atlas [tissue]ENSG00000170925-TEX13B [tissue]
HPRD02258
Protein Interaction databases
DIP (DOE-UCLA)Q9BXU2
IntAct (EBI)Q9BXU2
BioGRIDTEX13B
STRING (EMBL)TEX13B
ZODIACTEX13B
Ontologies - Pathways
QuickGOQ9BXU2
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkTEX13B
Atlas of Cancer Signalling NetworkTEX13B
Wikipedia pathwaysTEX13B
Orthology - Evolution
OrthoDB56156
GeneTree (enSembl)ENSG00000170925
Phylogenetic Trees/Animal Genes : TreeFamTEX13B
Homologs : HomoloGeneTEX13B
Homology/Alignments : Family Browser (UCSC)TEX13B
Gene fusions - Rearrangements
Fusion : QuiverTEX13B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX13B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX13B
dbVarTEX13B
ClinVarTEX13B
MonarchTEX13B
1000_GenomesTEX13B 
Exome Variant ServerTEX13B
GNOMAD BrowserENSG00000170925
Varsome BrowserTEX13B
ACMGTEX13B variants
VarityQ9BXU2
Genomic Variants (DGV)TEX13B [DGVbeta]
DECIPHERTEX13B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX13B 
Mutations
ICGC Data PortalTEX13B 
TCGA Data PortalTEX13B 
Broad Tumor PortalTEX13B
OASIS PortalTEX13B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEX13B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTEX13B
Mutations and Diseases : HGMDTEX13B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTEX13B
DgiDB (Drug Gene Interaction Database)TEX13B
DoCM (Curated mutations)TEX13B
CIViC (Clinical Interpretations of Variants in Cancer)TEX13B
Cancer3DTEX13B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300313   
Orphanet
DisGeNETTEX13B
MedgenTEX13B
Genetic Testing Registry TEX13B
NextProtQ9BXU2 [Medical]
GENETestsTEX13B
Target ValidationTEX13B
Huge Navigator TEX13B [HugePedia]
ClinGenTEX13B
Clinical trials, drugs, therapy
MyCancerGenomeTEX13B
Protein Interactions : CTDTEX13B
Pharm GKB GenePA36453
PharosQ9BXU2
Clinical trialTEX13B
Miscellaneous
canSAR (ICR)TEX13B
HarmonizomeTEX13B
DataMed IndexTEX13B
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTEX13B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:15 CEST 2021

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