Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TEX13C (TEX13 family member C)

Identity

Alias (NCBI)-
HGNC (Hugo) TEX13C
LocusID (NCBI) 100129520
Atlas_Id 78022
Location Xq25  [Link to chromosome band Xq25]
Location_base_pair Starts at 125319871 and ends at 125325214 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TEX13C   52277
Cards
Entrez_Gene (NCBI)TEX13C    TEX13 family member C
Aliases
GeneCards (Weizmann)TEX13C
Ensembl hg19 (Hinxton)ENSG00000282815 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000282815 [Gene_View]  ENSG00000282815 [Sequence]  chrX:125319871-125325214 [Contig_View]  TEX13C [Vega]
ICGC DataPortalENSG00000282815
TCGA cBioPortalTEX13C
AceView (NCBI)TEX13C
Genatlas (Paris)TEX13C
SOURCE (Princeton)TEX13C
Genetics Home Reference (NIH)TEX13C
Genomic and cartography
GoldenPath hg38 (UCSC)TEX13C  -     chrX:125319871-125325214 +  Xq25   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX13C  -     Xq25   [Description]    (hg19-Feb_2009)
GoldenPathTEX13C - Xq25 [CytoView hg19]  TEX13C - Xq25 [CytoView hg38]
ImmunoBaseENSG00000282815
Genome Data Viewer NCBITEX13C [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001195272
Consensus coding sequences : CCDS (NCBI)TEX13C
Gene ExpressionTEX13C [ NCBI-GEO ]   TEX13C [ EBI - ARRAY_EXPRESS ]   TEX13C [ SEEK ]   TEX13C [ MEM ]
Gene Expression Viewer (FireBrowse)TEX13C [ Firebrowse - Broad ]
GenevisibleExpression of TEX13C in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100129520
GTEX Portal (Tissue expression)TEX13C
Human Protein AtlasENSG00000282815-TEX13C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0A0J9YWL9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0A0J9YWL9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0A0J9YWL9
PhosPhoSitePlusA0A0J9YWL9
Domaine pattern : Prosite (Expaxy)ZF_RANBP2_1 (PS01358)   
Domains : Interpro (EBI)TEX13    Znf_RanBP2   
Domain families : Pfam (Sanger)TEX13 (PF15186)   
Domain families : Pfam (NCBI)pfam15186   
Conserved Domain (NCBI)TEX13C
SuperfamilyA0A0J9YWL9
AlphaFold pdb e-kbA0A0J9YWL9   
Human Protein Atlas [tissue]ENSG00000282815-TEX13C [tissue]
Protein Interaction databases
DIP (DOE-UCLA)A0A0J9YWL9
IntAct (EBI)A0A0J9YWL9
BioGRIDTEX13C
STRING (EMBL)TEX13C
ZODIACTEX13C
Ontologies - Pathways
QuickGOA0A0J9YWL9
Ontology : AmiGOmetal ion binding  
Ontology : EGO-EBImetal ion binding  
NDEx NetworkTEX13C
Atlas of Cancer Signalling NetworkTEX13C
Wikipedia pathwaysTEX13C
Orthology - Evolution
OrthoDB100129520
GeneTree (enSembl)ENSG00000282815
Phylogenetic Trees/Animal Genes : TreeFamTEX13C
Homologs : HomoloGeneTEX13C
Homology/Alignments : Family Browser (UCSC)TEX13C
Gene fusions - Rearrangements
Fusion : QuiverTEX13C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX13C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX13C
dbVarTEX13C
ClinVarTEX13C
MonarchTEX13C
1000_GenomesTEX13C 
Exome Variant ServerTEX13C
GNOMAD BrowserENSG00000282815
Varsome BrowserTEX13C
ACMGTEX13C variants
VarityA0A0J9YWL9
Genomic Variants (DGV)TEX13C [DGVbeta]
DECIPHERTEX13C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX13C 
Mutations
ICGC Data PortalTEX13C 
TCGA Data PortalTEX13C 
Broad Tumor PortalTEX13C
OASIS PortalTEX13C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEX13C  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTEX13C
Mutations and Diseases : HGMDTEX13C
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTEX13C
DgiDB (Drug Gene Interaction Database)TEX13C
DoCM (Curated mutations)TEX13C
CIViC (Clinical Interpretations of Variants in Cancer)TEX13C
Cancer3DTEX13C
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTEX13C
MedgenTEX13C
Genetic Testing Registry TEX13C
NextProtA0A0J9YWL9 [Medical]
GENETestsTEX13C
Target ValidationTEX13C
Huge Navigator TEX13C [HugePedia]
ClinGenTEX13C
Clinical trials, drugs, therapy
MyCancerGenomeTEX13C
Protein Interactions : CTDTEX13C
PharosA0A0J9YWL9
Clinical trialTEX13C
Miscellaneous
canSAR (ICR)TEX13C
HarmonizomeTEX13C
DataMed IndexTEX13C
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
EVEXTEX13C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:15 CEST 2021

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