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TEX13C (TEX13 family member C)

Identity

Other alias-
HGNC (Hugo) TEX13C
LocusID (NCBI) 100129520
Atlas_Id 78022
Location Xq25  [Link to chromosome band Xq25]
Location_base_pair Starts at 125320120 and ends at 125323101 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TEX13C   52277
Cards
Entrez_Gene (NCBI)TEX13C  100129520  TEX13 family member C
Aliases
GeneCards (Weizmann)TEX13C
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:125320120-125323101 [Contig_View]  TEX13C [Vega]
TCGA cBioPortalTEX13C
AceView (NCBI)TEX13C
Genatlas (Paris)TEX13C
WikiGenes100129520
SOURCE (Princeton)TEX13C
Genetics Home Reference (NIH)TEX13C
Genomic and cartography
GoldenPath hg38 (UCSC)TEX13C  -     chrX:125320120-125323101 +  Xq25   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX13C  -     Xq25   [Description]    (hg19-Feb_2009)
EnsemblTEX13C - Xq25 [CytoView hg19]  TEX13C - Xq25 [CytoView hg38]
Mapping of homologs : NCBITEX13C [Mapview hg19]  TEX13C [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001195272
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TEX13C
Cluster EST : UnigeneHs.728728 [ NCBI ]
CGAP (NCI)Hs.728728
Gene ExpressionTEX13C [ NCBI-GEO ]   TEX13C [ EBI - ARRAY_EXPRESS ]   TEX13C [ SEEK ]   TEX13C [ MEM ]
Gene Expression Viewer (FireBrowse)TEX13C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100129520
GTEX Portal (Tissue expression)TEX13C
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0A0J9YWL9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0A0J9YWL9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0A0J9YWL9
Splice isoforms : SwissVarA0A0J9YWL9
PhosPhoSitePlusA0A0J9YWL9
Domaine pattern : Prosite (Expaxy)ZF_RANBP2_1 (PS01358)   
Domains : Interpro (EBI)TEX13    Znf_RanBP2   
Domain families : Pfam (Sanger)TEX13 (PF15186)   
Domain families : Pfam (NCBI)pfam15186   
Conserved Domain (NCBI)TEX13C
DMDM Disease mutations100129520
Blocks (Seattle)TEX13C
SuperfamilyA0A0J9YWL9
Peptide AtlasA0A0J9YWL9
IPIIPI00979433   
Protein Interaction databases
DIP (DOE-UCLA)A0A0J9YWL9
IntAct (EBI)A0A0J9YWL9
BioGRIDTEX13C
STRING (EMBL)TEX13C
ZODIACTEX13C
Ontologies - Pathways
QuickGOA0A0J9YWL9
Ontology : AmiGOzinc ion binding  
Ontology : EGO-EBIzinc ion binding  
NDEx NetworkTEX13C
Atlas of Cancer Signalling NetworkTEX13C
Wikipedia pathwaysTEX13C
Orthology - Evolution
OrthoDB100129520
Phylogenetic Trees/Animal Genes : TreeFamTEX13C
HOVERGENA0A0J9YWL9
HOGENOMA0A0J9YWL9
Homologs : HomoloGeneTEX13C
Homology/Alignments : Family Browser (UCSC)TEX13C
Gene fusions - Rearrangements
Tumor Fusion PortalTEX13C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX13C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX13C
dbVarTEX13C
ClinVarTEX13C
1000_GenomesTEX13C 
Exome Variant ServerTEX13C
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP100129520
Genomic Variants (DGV)TEX13C [DGVbeta]
DECIPHERTEX13C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX13C 
Mutations
ICGC Data PortalTEX13C 
TCGA Data PortalTEX13C 
Broad Tumor PortalTEX13C
OASIS PortalTEX13C [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTEX13C
BioMutasearch TEX13C
DgiDB (Drug Gene Interaction Database)TEX13C
DoCM (Curated mutations)TEX13C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEX13C (select a term)
intoGenTEX13C
Cancer3DTEX13C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTEX13C
MedgenTEX13C
Genetic Testing Registry TEX13C
NextProtA0A0J9YWL9 [Medical]
TSGene100129520
GENETestsTEX13C
Target ValidationTEX13C
Huge Navigator TEX13C [HugePedia]
snp3D : Map Gene to Disease100129520
BioCentury BCIQTEX13C
ClinGenTEX13C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100129520
Clinical trialTEX13C
Miscellaneous
canSAR (ICR)TEX13C (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEX13C
EVEXTEX13C
GoPubMedTEX13C
iHOPTEX13C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:00:47 CET 2017

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