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TEX15 (testis expressed 15)

Identity

Alias_namestestis expressed sequence 15
Alias_symbol (synonym)CT42
Other alias
HGNC (Hugo) TEX15
LocusID (NCBI) 56154
Atlas_Id 50954
Location 8p12  [Link to chromosome band 8p12]
Location_base_pair Starts at 30689060 and ends at 30706533 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TEX15   11738
Cards
Entrez_Gene (NCBI)TEX15  56154  testis expressed 15
AliasesCT42
GeneCards (Weizmann)TEX15
Ensembl hg19 (Hinxton)ENSG00000133863 [Gene_View]  chr8:30689060-30706533 [Contig_View]  TEX15 [Vega]
Ensembl hg38 (Hinxton)ENSG00000133863 [Gene_View]  chr8:30689060-30706533 [Contig_View]  TEX15 [Vega]
ICGC DataPortalENSG00000133863
TCGA cBioPortalTEX15
AceView (NCBI)TEX15
Genatlas (Paris)TEX15
WikiGenes56154
SOURCE (Princeton)TEX15
Genetics Home Reference (NIH)TEX15
Genomic and cartography
GoldenPath hg19 (UCSC)TEX15  -     chr8:30689060-30706533 -  8p12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TEX15  -     8p12   [Description]    (hg38-Dec_2013)
EnsemblTEX15 - 8p12 [CytoView hg19]  TEX15 - 8p12 [CytoView hg38]
Mapping of homologs : NCBITEX15 [Mapview hg19]  TEX15 [Mapview hg38]
OMIM605795   
Gene and transcription
Genbank (Entrez)AF285605 AL133653 BC140934 BC141841
RefSeq transcript (Entrez)NM_031271
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_167187 NW_004929337
Consensus coding sequences : CCDS (NCBI)TEX15
Cluster EST : UnigeneHs.571446 [ NCBI ]
CGAP (NCI)Hs.571446
Alternative Splicing GalleryENSG00000133863
Gene ExpressionTEX15 [ NCBI-GEO ]   TEX15 [ EBI - ARRAY_EXPRESS ]   TEX15 [ SEEK ]   TEX15 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56154
GTEX Portal (Tissue expression)TEX15
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXT5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXT5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXT5
Splice isoforms : SwissVarQ9BXT5
PhosPhoSitePlusQ9BXT5
Domains : Interpro (EBI)TEX15    TEX15_dom   
Domain families : Pfam (Sanger)TEX15 (PF15326)   
Domain families : Pfam (NCBI)pfam15326   
Conserved Domain (NCBI)TEX15
DMDM Disease mutations56154
Blocks (Seattle)TEX15
SuperfamilyQ9BXT5
Human Protein AtlasENSG00000133863
Peptide AtlasQ9BXT5
HPRD09313
IPIIPI00010369   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXT5
IntAct (EBI)Q9BXT5
FunCoupENSG00000133863
BioGRIDTEX15
STRING (EMBL)TEX15
ZODIACTEX15
Ontologies - Pathways
QuickGOQ9BXT5
Ontology : AmiGOnucleus  cytoplasm  DNA repair  synaptonemal complex assembly  male meiosis  spermatogenesis  fertilization  regulation of double-strand break repair via homologous recombination  cell differentiation  male genitalia development  regulation of protein localization  protein localization to chromosome  homeostasis of number of cells within a tissue  
Ontology : EGO-EBInucleus  cytoplasm  DNA repair  synaptonemal complex assembly  male meiosis  spermatogenesis  fertilization  regulation of double-strand break repair via homologous recombination  cell differentiation  male genitalia development  regulation of protein localization  protein localization to chromosome  homeostasis of number of cells within a tissue  
NDEx NetworkTEX15
Atlas of Cancer Signalling NetworkTEX15
Wikipedia pathwaysTEX15
Orthology - Evolution
OrthoDB56154
GeneTree (enSembl)ENSG00000133863
Phylogenetic Trees/Animal Genes : TreeFamTEX15
HOVERGENQ9BXT5
HOGENOMQ9BXT5
Homologs : HomoloGeneTEX15
Homology/Alignments : Family Browser (UCSC)TEX15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX15
dbVarTEX15
ClinVarTEX15
1000_GenomesTEX15 
Exome Variant ServerTEX15
ExAC (Exome Aggregation Consortium)TEX15 (select the gene name)
Genetic variants : HAPMAP56154
Genomic Variants (DGV)TEX15 [DGVbeta]
DECIPHER (Syndromes)8:30689060-30706533  ENSG00000133863
CONAN: Copy Number AnalysisTEX15 
Mutations
ICGC Data PortalTEX15 
TCGA Data PortalTEX15 
Broad Tumor PortalTEX15
OASIS PortalTEX15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEX15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTEX15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TEX15
DgiDB (Drug Gene Interaction Database)TEX15
DoCM (Curated mutations)TEX15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEX15 (select a term)
intoGenTEX15
Cancer3DTEX15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605795   
Orphanet
MedgenTEX15
Genetic Testing Registry TEX15
NextProtQ9BXT5 [Medical]
TSGene56154
GENETestsTEX15
Huge Navigator TEX15 [HugePedia]
snp3D : Map Gene to Disease56154
BioCentury BCIQTEX15
ClinGenTEX15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56154
Chemical/Pharm GKB GenePA36455
Clinical trialTEX15
Miscellaneous
canSAR (ICR)TEX15 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEX15
EVEXTEX15
GoPubMedTEX15
iHOPTEX15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:30:51 CET 2017

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