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TEX19 (testis expressed 19)

Identity

Other alias-
HGNC (Hugo) TEX19
LocusID (NCBI) 400629
Atlas_Id 56787
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 82359247 and ends at 82363776 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TEX19   33802
Cards
Entrez_Gene (NCBI)TEX19  400629  testis expressed 19
Aliases
GeneCards (Weizmann)TEX19
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:82359247-82363776 [Contig_View]  TEX19 [Vega]
TCGA cBioPortalTEX19
AceView (NCBI)TEX19
Genatlas (Paris)TEX19
WikiGenes400629
SOURCE (Princeton)TEX19
Genetics Home Reference (NIH)TEX19
Genomic and cartography
GoldenPath hg38 (UCSC)TEX19  -     chr17:82359247-82363776 +  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX19  -     17q25.3   [Description]    (hg19-Feb_2009)
EnsemblTEX19 - 17q25.3 [CytoView hg19]  TEX19 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBITEX19 [Mapview hg19]  TEX19 [Mapview hg38]
OMIM615647   
Gene and transcription
Genbank (Entrez)AK093086 BC016939 BC036191 BC050391 BC057820
RefSeq transcript (Entrez)NM_207459
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TEX19
Cluster EST : UnigeneHs.231897 [ NCBI ]
CGAP (NCI)Hs.231897
Gene ExpressionTEX19 [ NCBI-GEO ]   TEX19 [ EBI - ARRAY_EXPRESS ]   TEX19 [ SEEK ]   TEX19 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400629
GTEX Portal (Tissue expression)TEX19
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NA77   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NA77  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NA77
Splice isoforms : SwissVarQ8NA77
PhosPhoSitePlusQ8NA77
Domains : Interpro (EBI)TEX19   
Domain families : Pfam (Sanger)TEX19 (PF15553)   
Domain families : Pfam (NCBI)pfam15553   
Conserved Domain (NCBI)TEX19
DMDM Disease mutations400629
Blocks (Seattle)TEX19
SuperfamilyQ8NA77
Peptide AtlasQ8NA77
IPIIPI00173410   
Protein Interaction databases
DIP (DOE-UCLA)Q8NA77
IntAct (EBI)Q8NA77
BioGRIDTEX19
STRING (EMBL)TEX19
ZODIACTEX19
Ontologies - Pathways
QuickGOQ8NA77
Ontology : AmiGOcytoplasm  spermatogenesis  cell differentiation  meiotic cell cycle  
Ontology : EGO-EBIcytoplasm  spermatogenesis  cell differentiation  meiotic cell cycle  
NDEx NetworkTEX19
Atlas of Cancer Signalling NetworkTEX19
Wikipedia pathwaysTEX19
Orthology - Evolution
OrthoDB400629
Phylogenetic Trees/Animal Genes : TreeFamTEX19
HOVERGENQ8NA77
HOGENOMQ8NA77
Homologs : HomoloGeneTEX19
Homology/Alignments : Family Browser (UCSC)TEX19
Gene fusions - Rearrangements
Tumor Fusion PortalTEX19
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX19
dbVarTEX19
ClinVarTEX19
1000_GenomesTEX19 
Exome Variant ServerTEX19
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP400629
Genomic Variants (DGV)TEX19 [DGVbeta]
DECIPHERTEX19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX19 
Mutations
ICGC Data PortalTEX19 
TCGA Data PortalTEX19 
Broad Tumor PortalTEX19
OASIS PortalTEX19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEX19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTEX19
BioMutasearch TEX19
DgiDB (Drug Gene Interaction Database)TEX19
DoCM (Curated mutations)TEX19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEX19 (select a term)
intoGenTEX19
Cancer3DTEX19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615647   
Orphanet
DisGeNETTEX19
MedgenTEX19
Genetic Testing Registry TEX19
NextProtQ8NA77 [Medical]
TSGene400629
GENETestsTEX19
Target ValidationTEX19
Huge Navigator TEX19 [HugePedia]
snp3D : Map Gene to Disease400629
BioCentury BCIQTEX19
ClinGenTEX19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400629
Chemical/Pharm GKB GenePA165433159
Clinical trialTEX19
Miscellaneous
canSAR (ICR)TEX19 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEX19
EVEXTEX19
GoPubMedTEX19
iHOPTEX19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:38:12 CET 2017

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