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TEX19 (testis expressed 19)

Identity

Alias (NCBI)-
HGNC (Hugo) TEX19
HGNC Alias symbFLJ35767
LocusID (NCBI) 400629
Atlas_Id 56787
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 82359247 and ends at 82363775 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TEX19   33802
Cards
Entrez_Gene (NCBI)TEX19    testis expressed 19
Aliases
GeneCards (Weizmann)TEX19
Ensembl hg19 (Hinxton)ENSG00000182459 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182459 [Gene_View]  ENSG00000182459 [Sequence]  chr17:82359247-82363775 [Contig_View]  TEX19 [Vega]
ICGC DataPortalENSG00000182459
TCGA cBioPortalTEX19
AceView (NCBI)TEX19
Genatlas (Paris)TEX19
SOURCE (Princeton)TEX19
Genetics Home Reference (NIH)TEX19
Genomic and cartography
GoldenPath hg38 (UCSC)TEX19  -     chr17:82359247-82363775 +  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX19  -     17q25.3   [Description]    (hg19-Feb_2009)
GoldenPathTEX19 - 17q25.3 [CytoView hg19]  TEX19 - 17q25.3 [CytoView hg38]
ImmunoBaseENSG00000182459
Genome Data Viewer NCBITEX19 [Mapview hg19]  
OMIM615647   
Gene and transcription
Genbank (Entrez)AK093086 BC016939 BC036191 BC050391 BC057820
RefSeq transcript (Entrez)NM_207459
Consensus coding sequences : CCDS (NCBI)TEX19
Gene ExpressionTEX19 [ NCBI-GEO ]   TEX19 [ EBI - ARRAY_EXPRESS ]   TEX19 [ SEEK ]   TEX19 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX19 [ Firebrowse - Broad ]
GenevisibleExpression of TEX19 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400629
GTEX Portal (Tissue expression)TEX19
Human Protein AtlasENSG00000182459-TEX19 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NA77   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NA77  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NA77
PhosPhoSitePlusQ8NA77
Domains : Interpro (EBI)TEX19   
Domain families : Pfam (Sanger)TEX19 (PF15553)   
Domain families : Pfam (NCBI)pfam15553   
Conserved Domain (NCBI)TEX19
SuperfamilyQ8NA77
AlphaFold pdb e-kbQ8NA77   
Human Protein Atlas [tissue]ENSG00000182459-TEX19 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q8NA77
IntAct (EBI)Q8NA77
BioGRIDTEX19
STRING (EMBL)TEX19
ZODIACTEX19
Ontologies - Pathways
QuickGOQ8NA77
Ontology : AmiGOplacenta development  protein binding  nucleus  cytoplasm  reciprocal meiotic recombination  male meiotic nuclear division  spermatogenesis  spermatogenesis  male gonad development  negative regulation of transposition  negative regulation of transposition  cell differentiation  piRNA binding  
Ontology : EGO-EBIplacenta development  protein binding  nucleus  cytoplasm  reciprocal meiotic recombination  male meiotic nuclear division  spermatogenesis  spermatogenesis  male gonad development  negative regulation of transposition  negative regulation of transposition  cell differentiation  piRNA binding  
NDEx NetworkTEX19
Atlas of Cancer Signalling NetworkTEX19
Wikipedia pathwaysTEX19
Orthology - Evolution
OrthoDB400629
GeneTree (enSembl)ENSG00000182459
Phylogenetic Trees/Animal Genes : TreeFamTEX19
Homologs : HomoloGeneTEX19
Homology/Alignments : Family Browser (UCSC)TEX19
Gene fusions - Rearrangements
Fusion : QuiverTEX19
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX19
dbVarTEX19
ClinVarTEX19
MonarchTEX19
1000_GenomesTEX19 
Exome Variant ServerTEX19
GNOMAD BrowserENSG00000182459
Varsome BrowserTEX19
ACMGTEX19 variants
VarityQ8NA77
Genomic Variants (DGV)TEX19 [DGVbeta]
DECIPHERTEX19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX19 
Mutations
ICGC Data PortalTEX19 
TCGA Data PortalTEX19 
Broad Tumor PortalTEX19
OASIS PortalTEX19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEX19  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTEX19
Mutations and Diseases : HGMDTEX19
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTEX19
DgiDB (Drug Gene Interaction Database)TEX19
DoCM (Curated mutations)TEX19
CIViC (Clinical Interpretations of Variants in Cancer)TEX19
Cancer3DTEX19
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615647   
Orphanet
DisGeNETTEX19
MedgenTEX19
Genetic Testing Registry TEX19
NextProtQ8NA77 [Medical]
GENETestsTEX19
Target ValidationTEX19
Huge Navigator TEX19 [HugePedia]
ClinGenTEX19
Clinical trials, drugs, therapy
MyCancerGenomeTEX19
Protein Interactions : CTDTEX19
Pharm GKB GenePA165433159
PharosQ8NA77
Clinical trialTEX19
Miscellaneous
canSAR (ICR)TEX19
HarmonizomeTEX19
DataMed IndexTEX19
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTEX19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:34:50 CEST 2021

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