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TEX2 (testis expressed 2)

Identity

Alias (NCBI)HT008
TMEM96
HGNC (Hugo) TEX2
HGNC Alias symbHT008
TMEM96
KIAA1738
HGNC Alias nametransmembrane protein 96
HGNC Previous nametestis expressed sequence 2
LocusID (NCBI) 55852
Atlas_Id 74630
Location 17q23.3  [Link to chromosome band 17q23]
Location_base_pair Starts at 64147228 and ends at 64263260 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARSG (17q24.2) / TEX2 (17q23.3)CEP112 (17q24.1) / TEX2 (17q23.3)MED13 (17q23.2) / TEX2 (17q23.3)
MSI2 (17q22) / TEX2 (17q23.3)MYO1D (17q11.2) / TEX2 (17q23.3)RPS6KB1 (17q23.1) / TEX2 (17q23.3)
TEX2 (17q23.3) / GDPD1 (17q22)TEX2 (17q23.3) / TTYH2 (17q25.1)UNC5D (8p12) / TEX2 (17q23.3)
RPS6KB1 TEX2MED13 TEX2ARSG TEX2
MSI2 TEX2MYO1D TEX2TEX2 GDPD1
TEX2 TTYH2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TEX2   30884
Cards
Entrez_Gene (NCBI)TEX2    testis expressed 2
AliasesHT008; TMEM96
GeneCards (Weizmann)TEX2
Ensembl hg19 (Hinxton)ENSG00000136478 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136478 [Gene_View]  ENSG00000136478 [Sequence]  chr17:64147228-64263260 [Contig_View]  TEX2 [Vega]
ICGC DataPortalENSG00000136478
TCGA cBioPortalTEX2
AceView (NCBI)TEX2
Genatlas (Paris)TEX2
SOURCE (Princeton)TEX2
Genetics Home Reference (NIH)TEX2
Genomic and cartography
GoldenPath hg38 (UCSC)TEX2  -     chr17:64147228-64263260 -  17q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX2  -     17q23.3   [Description]    (hg19-Feb_2009)
GoldenPathTEX2 - 17q23.3 [CytoView hg19]  TEX2 - 17q23.3 [CytoView hg38]
ImmunoBaseENSG00000136478
Genome Data Viewer NCBITEX2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA825291 AB051525 AF163260 AF220182 AK000369
RefSeq transcript (Entrez)NM_001288732 NM_001288733 NM_018469
Consensus coding sequences : CCDS (NCBI)TEX2
Gene ExpressionTEX2 [ NCBI-GEO ]   TEX2 [ EBI - ARRAY_EXPRESS ]   TEX2 [ SEEK ]   TEX2 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX2 [ Firebrowse - Broad ]
GenevisibleExpression of TEX2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55852
GTEX Portal (Tissue expression)TEX2
Human Protein AtlasENSG00000136478-TEX2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IWB9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IWB9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IWB9
PhosPhoSitePlusQ8IWB9
Domaine pattern : Prosite (Expaxy)SMP (PS51847)   
Domains : Interpro (EBI)SMP_LBD   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TEX2
SuperfamilyQ8IWB9
AlphaFold pdb e-kbQ8IWB9   
Human Protein Atlas [tissue]ENSG00000136478-TEX2 [tissue]
HPRD13716
Protein Interaction databases
DIP (DOE-UCLA)Q8IWB9
IntAct (EBI)Q8IWB9
BioGRIDTEX2
STRING (EMBL)TEX2
ZODIACTEX2
Ontologies - Pathways
QuickGOQ8IWB9
Ontology : AmiGOmolecular_function  endoplasmic reticulum  endoplasmic reticulum membrane  sphingolipid metabolic process  lipid transport  signal transduction  lipid binding  integral component of membrane  nuclear membrane  
Ontology : EGO-EBImolecular_function  endoplasmic reticulum  endoplasmic reticulum membrane  sphingolipid metabolic process  lipid transport  signal transduction  lipid binding  integral component of membrane  nuclear membrane  
NDEx NetworkTEX2
Atlas of Cancer Signalling NetworkTEX2
Wikipedia pathwaysTEX2
Orthology - Evolution
OrthoDB55852
GeneTree (enSembl)ENSG00000136478
Phylogenetic Trees/Animal Genes : TreeFamTEX2
Homologs : HomoloGeneTEX2
Homology/Alignments : Family Browser (UCSC)TEX2
Gene fusions - Rearrangements
Fusion : QuiverTEX2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX2
dbVarTEX2
ClinVarTEX2
MonarchTEX2
1000_GenomesTEX2 
Exome Variant ServerTEX2
GNOMAD BrowserENSG00000136478
Varsome BrowserTEX2
ACMGTEX2 variants
VarityQ8IWB9
Genomic Variants (DGV)TEX2 [DGVbeta]
DECIPHERTEX2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX2 
Mutations
ICGC Data PortalTEX2 
TCGA Data PortalTEX2 
Broad Tumor PortalTEX2
OASIS PortalTEX2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEX2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTEX2
Mutations and Diseases : HGMDTEX2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTEX2
DgiDB (Drug Gene Interaction Database)TEX2
DoCM (Curated mutations)TEX2
CIViC (Clinical Interpretations of Variants in Cancer)TEX2
Cancer3DTEX2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTEX2
MedgenTEX2
Genetic Testing Registry TEX2
NextProtQ8IWB9 [Medical]
GENETestsTEX2
Target ValidationTEX2
Huge Navigator TEX2 [HugePedia]
ClinGenTEX2
Clinical trials, drugs, therapy
MyCancerGenomeTEX2
Protein Interactions : CTDTEX2
Pharm GKB GenePA142670820
PharosQ8IWB9
Clinical trialTEX2
Miscellaneous
canSAR (ICR)TEX2
HarmonizomeTEX2
DataMed IndexTEX2
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTEX2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:25:15 CEST 2021

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