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TEX2 (testis expressed 2)

Identity

Alias_namestestis expressed sequence 2
Alias_symbol (synonym)HT008
TMEM96
KIAA1738
Other alias
HGNC (Hugo) TEX2
LocusID (NCBI) 55852
Atlas_Id 74630
Location 17q23.3  [Link to chromosome band 17q23]
Location_base_pair Starts at 64147433 and ends at 64263323 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARSG (17q24.2) / TEX2 (17q23.3)CEP112 (17q24.1) / TEX2 (17q23.3)MED13 (17q23.2) / TEX2 (17q23.3)
MSI2 (17q22) / TEX2 (17q23.3)MYO1D (17q11.2) / TEX2 (17q23.3)RPS6KB1 (17q23.1) / TEX2 (17q23.3)
TEX2 (17q23.3) / GDPD1 (17q22)TEX2 (17q23.3) / TTYH2 (17q25.1)UNC5D (8p12) / TEX2 (17q23.3)
RPS6KB1 TEX2MED13 TEX2ARSG TEX2
MSI2 TEX2MYO1D TEX2TEX2 GDPD1
TEX2 TTYH2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TEX2   30884
Cards
Entrez_Gene (NCBI)TEX2  55852  testis expressed 2
AliasesHT008; TMEM96
GeneCards (Weizmann)TEX2
Ensembl hg19 (Hinxton)ENSG00000136478 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136478 [Gene_View]  chr17:64147433-64263323 [Contig_View]  TEX2 [Vega]
ICGC DataPortalENSG00000136478
TCGA cBioPortalTEX2
AceView (NCBI)TEX2
Genatlas (Paris)TEX2
WikiGenes55852
SOURCE (Princeton)TEX2
Genetics Home Reference (NIH)TEX2
Genomic and cartography
GoldenPath hg38 (UCSC)TEX2  -     chr17:64147433-64263323 -  17q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX2  -     17q23.3   [Description]    (hg19-Feb_2009)
EnsemblTEX2 - 17q23.3 [CytoView hg19]  TEX2 - 17q23.3 [CytoView hg38]
Mapping of homologs : NCBITEX2 [Mapview hg19]  TEX2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA825291 AB051525 AF163260 AF220182 AK000369
RefSeq transcript (Entrez)NM_001288732 NM_001288733 NM_018469
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TEX2
Cluster EST : UnigeneHs.175414 [ NCBI ]
CGAP (NCI)Hs.175414
Alternative Splicing GalleryENSG00000136478
Gene ExpressionTEX2 [ NCBI-GEO ]   TEX2 [ EBI - ARRAY_EXPRESS ]   TEX2 [ SEEK ]   TEX2 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55852
GTEX Portal (Tissue expression)TEX2
Human Protein AtlasENSG00000136478-TEX2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IWB9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IWB9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IWB9
Splice isoforms : SwissVarQ8IWB9
PhosPhoSitePlusQ8IWB9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TEX2
DMDM Disease mutations55852
Blocks (Seattle)TEX2
SuperfamilyQ8IWB9
Human Protein Atlas [tissue]ENSG00000136478-TEX2 [tissue]
Peptide AtlasQ8IWB9
HPRD13716
IPIIPI00761041   IPI00217261   
Protein Interaction databases
DIP (DOE-UCLA)Q8IWB9
IntAct (EBI)Q8IWB9
FunCoupENSG00000136478
BioGRIDTEX2
STRING (EMBL)TEX2
ZODIACTEX2
Ontologies - Pathways
QuickGOQ8IWB9
Ontology : AmiGOmolecular_function  endoplasmic reticulum  sphingolipid metabolic process  signal transduction  lipid binding  integral component of membrane  
Ontology : EGO-EBImolecular_function  endoplasmic reticulum  sphingolipid metabolic process  signal transduction  lipid binding  integral component of membrane  
NDEx NetworkTEX2
Atlas of Cancer Signalling NetworkTEX2
Wikipedia pathwaysTEX2
Orthology - Evolution
OrthoDB55852
GeneTree (enSembl)ENSG00000136478
Phylogenetic Trees/Animal Genes : TreeFamTEX2
HOVERGENQ8IWB9
HOGENOMQ8IWB9
Homologs : HomoloGeneTEX2
Homology/Alignments : Family Browser (UCSC)TEX2
Gene fusions - Rearrangements
Fusion: TCGA_MDACCRPS6KB1 TEX2
Fusion: TCGA_MDACCMED13 TEX2
Fusion: TCGA_MDACCARSG TEX2
Fusion: TCGA_MDACCMSI2 TEX2
Fusion: TCGA_MDACCMYO1D TEX2
Fusion: TCGA_MDACCTEX2 GDPD1
Fusion: TCGA_MDACCTEX2 TTYH2
Tumor Fusion PortalTEX2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX2
dbVarTEX2
ClinVarTEX2
1000_GenomesTEX2 
Exome Variant ServerTEX2
ExAC (Exome Aggregation Consortium)ENSG00000136478
GNOMAD BrowserENSG00000136478
Genetic variants : HAPMAP55852
Genomic Variants (DGV)TEX2 [DGVbeta]
DECIPHERTEX2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX2 
Mutations
ICGC Data PortalTEX2 
TCGA Data PortalTEX2 
Broad Tumor PortalTEX2
OASIS PortalTEX2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEX2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTEX2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TEX2
DgiDB (Drug Gene Interaction Database)TEX2
DoCM (Curated mutations)TEX2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEX2 (select a term)
intoGenTEX2
Cancer3DTEX2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTEX2
MedgenTEX2
Genetic Testing Registry TEX2
NextProtQ8IWB9 [Medical]
TSGene55852
GENETestsTEX2
Target ValidationTEX2
Huge Navigator TEX2 [HugePedia]
snp3D : Map Gene to Disease55852
BioCentury BCIQTEX2
ClinGenTEX2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55852
Chemical/Pharm GKB GenePA142670820
Clinical trialTEX2
Miscellaneous
canSAR (ICR)TEX2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEX2
EVEXTEX2
GoPubMedTEX2
iHOPTEX2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:37:05 CET 2017

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