Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TEX22 (testis expressed 22)

Identity

Other alias-
HGNC (Hugo) TEX22
LocusID (NCBI) 647310
Atlas_Id 74632
Location 14q32.33  [Link to chromosome band 14q32]
Location_base_pair Starts at 105398583 and ends at 105413859 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TEX22 (14q32.33) / PLEKHG2 (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TEX22   40026
Cards
Entrez_Gene (NCBI)TEX22  647310  testis expressed 22
Aliases
GeneCards (Weizmann)TEX22
Ensembl hg19 (Hinxton)ENSG00000226174 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000226174 [Gene_View]  chr14:105398583-105413859 [Contig_View]  TEX22 [Vega]
ICGC DataPortalENSG00000226174
TCGA cBioPortalTEX22
AceView (NCBI)TEX22
Genatlas (Paris)TEX22
WikiGenes647310
SOURCE (Princeton)TEX22
Genetics Home Reference (NIH)TEX22
Genomic and cartography
GoldenPath hg38 (UCSC)TEX22  -     chr14:105398583-105413859 +  14q32.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX22  -     14q32.33   [Description]    (hg19-Feb_2009)
EnsemblTEX22 - 14q32.33 [CytoView hg19]  TEX22 - 14q32.33 [CytoView hg38]
Mapping of homologs : NCBITEX22 [Mapview hg19]  TEX22 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC009212 BC012979 BC015572 BX378619
RefSeq transcript (Entrez)NM_001195082
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TEX22
Cluster EST : UnigeneHs.729499 [ NCBI ]
CGAP (NCI)Hs.729499
Alternative Splicing GalleryENSG00000226174
Gene ExpressionTEX22 [ NCBI-GEO ]   TEX22 [ EBI - ARRAY_EXPRESS ]   TEX22 [ SEEK ]   TEX22 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)647310
GTEX Portal (Tissue expression)TEX22
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9J3V5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9J3V5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9J3V5
Splice isoforms : SwissVarC9J3V5
PhosPhoSitePlusC9J3V5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TEX22
DMDM Disease mutations647310
Blocks (Seattle)TEX22
SuperfamilyC9J3V5
Human Protein AtlasENSG00000226174
Peptide AtlasC9J3V5
IPIIPI00788195   
Protein Interaction databases
DIP (DOE-UCLA)C9J3V5
IntAct (EBI)C9J3V5
FunCoupENSG00000226174
BioGRIDTEX22
STRING (EMBL)TEX22
ZODIACTEX22
Ontologies - Pathways
QuickGOC9J3V5
Ontology : AmiGOacrosomal vesicle  
Ontology : EGO-EBIacrosomal vesicle  
NDEx NetworkTEX22
Atlas of Cancer Signalling NetworkTEX22
Wikipedia pathwaysTEX22
Orthology - Evolution
OrthoDB647310
GeneTree (enSembl)ENSG00000226174
Phylogenetic Trees/Animal Genes : TreeFamTEX22
HOVERGENC9J3V5
HOGENOMC9J3V5
Homologs : HomoloGeneTEX22
Homology/Alignments : Family Browser (UCSC)TEX22
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX22 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX22
dbVarTEX22
ClinVarTEX22
1000_GenomesTEX22 
Exome Variant ServerTEX22
ExAC (Exome Aggregation Consortium)TEX22 (select the gene name)
Genetic variants : HAPMAP647310
Genomic Variants (DGV)TEX22 [DGVbeta]
DECIPHERTEX22 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX22 
Mutations
ICGC Data PortalTEX22 
TCGA Data PortalTEX22 
Broad Tumor PortalTEX22
OASIS PortalTEX22 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTEX22
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TEX22
DgiDB (Drug Gene Interaction Database)TEX22
DoCM (Curated mutations)TEX22 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEX22 (select a term)
intoGenTEX22
Cancer3DTEX22(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTEX22
Genetic Testing Registry TEX22
NextProtC9J3V5 [Medical]
TSGene647310
GENETestsTEX22
Target ValidationTEX22
Huge Navigator TEX22 [HugePedia]
snp3D : Map Gene to Disease647310
BioCentury BCIQTEX22
ClinGenTEX22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD647310
Chemical/Pharm GKB GenePA166049048
Clinical trialTEX22
Miscellaneous
canSAR (ICR)TEX22 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEX22
EVEXTEX22
GoPubMedTEX22
iHOPTEX22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:45:17 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.