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TEX28 (testis expressed 28)

Identity

Alias_namesCXorf2
chromosome X open reading frame 2
Alias_symbol (synonym)fTEX
Other aliasMRX99
TEX28P1
TEX28P2
HGNC (Hugo) TEX28
LocusID (NCBI) 1527
Atlas_Id 74637
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 154271265 and ends at 154295211 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ABCD1 (Xq28) / TEX28 (Xq28)ARHGAP4 (Xq28) / TEX28 (Xq28)BCAP31 (Xq28) / TEX28 (Xq28)
BGN (Xq28) / TEX28 (Xq28)PNCK (Xq28) / TEX28 (Xq28)ZNF275 (Xq28) / TEX28 (Xq28)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TEX28   2563
Cards
Entrez_Gene (NCBI)TEX28  1527  testis expressed 28
AliasesCXorf2; MRX99; TEX28P1; TEX28P2; 
fTEX
GeneCards (Weizmann)TEX28
Ensembl hg19 (Hinxton)ENSG00000278057 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000278057 [Gene_View]  chrX:154271265-154295211 [Contig_View]  TEX28 [Vega]
ICGC DataPortalENSG00000278057
TCGA cBioPortalTEX28
AceView (NCBI)TEX28
Genatlas (Paris)TEX28
WikiGenes1527
SOURCE (Princeton)TEX28
Genetics Home Reference (NIH)TEX28
Genomic and cartography
GoldenPath hg38 (UCSC)TEX28  -     chrX:154271265-154295211 -  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX28  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblTEX28 - Xq28 [CytoView hg19]  TEX28 - Xq28 [CytoView hg38]
Mapping of homologs : NCBITEX28 [Mapview hg19]  TEX28 [Mapview hg38]
OMIM300092   
Gene and transcription
Genbank (Entrez)BC026183 DB457033 DQ655913 JF432684 U93720
RefSeq transcript (Entrez)NM_001205201 NM_001586
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TEX28
Cluster EST : UnigeneHs.738440 [ NCBI ]
CGAP (NCI)Hs.738440
Alternative Splicing GalleryENSG00000278057
Gene ExpressionTEX28 [ NCBI-GEO ]   TEX28 [ EBI - ARRAY_EXPRESS ]   TEX28 [ SEEK ]   TEX28 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX28 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1527
GTEX Portal (Tissue expression)TEX28
Human Protein AtlasENSG00000278057-TEX28 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15482   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15482  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15482
Splice isoforms : SwissVarO15482
PhosPhoSitePlusO15482
Domains : Interpro (EBI)Testis-specific_TEX28    TEX28/TMCC   
Domain families : Pfam (Sanger)Tmemb_cc2 (PF10267)   
Domain families : Pfam (NCBI)pfam10267   
Conserved Domain (NCBI)TEX28
DMDM Disease mutations1527
Blocks (Seattle)TEX28
SuperfamilyO15482
Human Protein Atlas [tissue]ENSG00000278057-TEX28 [tissue]
Peptide AtlasO15482
HPRD02103
IPIIPI00289943   IPI00792349   
Protein Interaction databases
DIP (DOE-UCLA)O15482
IntAct (EBI)O15482
FunCoupENSG00000278057
BioGRIDTEX28
STRING (EMBL)TEX28
ZODIACTEX28
Ontologies - Pathways
QuickGOO15482
Ontology : AmiGOmolecular_function  biological_process  integral component of membrane  
Ontology : EGO-EBImolecular_function  biological_process  integral component of membrane  
NDEx NetworkTEX28
Atlas of Cancer Signalling NetworkTEX28
Wikipedia pathwaysTEX28
Orthology - Evolution
OrthoDB1527
GeneTree (enSembl)ENSG00000278057
Phylogenetic Trees/Animal Genes : TreeFamTEX28
HOVERGENO15482
HOGENOMO15482
Homologs : HomoloGeneTEX28
Homology/Alignments : Family Browser (UCSC)TEX28
Gene fusions - Rearrangements
Tumor Fusion PortalTEX28
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX28 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX28
dbVarTEX28
ClinVarTEX28
1000_GenomesTEX28 
Exome Variant ServerTEX28
ExAC (Exome Aggregation Consortium)ENSG00000278057
GNOMAD BrowserENSG00000278057
Genetic variants : HAPMAP1527
Genomic Variants (DGV)TEX28 [DGVbeta]
DECIPHERTEX28 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX28 
Mutations
ICGC Data PortalTEX28 
TCGA Data PortalTEX28 
Broad Tumor PortalTEX28
OASIS PortalTEX28 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTEX28
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TEX28
DgiDB (Drug Gene Interaction Database)TEX28
DoCM (Curated mutations)TEX28 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEX28 (select a term)
intoGenTEX28
Cancer3DTEX28(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300092   
Orphanet
DisGeNETTEX28
MedgenTEX28
Genetic Testing Registry TEX28
NextProtO15482 [Medical]
TSGene1527
GENETestsTEX28
Target ValidationTEX28
Huge Navigator TEX28 [HugePedia]
snp3D : Map Gene to Disease1527
BioCentury BCIQTEX28
ClinGenTEX28
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1527
Chemical/Pharm GKB GenePA162405646
Clinical trialTEX28
Miscellaneous
canSAR (ICR)TEX28 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEX28
EVEXTEX28
GoPubMedTEX28
iHOPTEX28
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 21 14:00:47 CET 2017

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