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TEX29 (testis expressed 29)

Identity

Alias_namesC13orf16
chromosome 13 open reading frame 16
Alias_symbol (synonym)bA474D23.1
MGC35169
Other alias
HGNC (Hugo) TEX29
LocusID (NCBI) 121793
Atlas_Id 74638
Location 13q34  [Link to chromosome band 13q34]
Location_base_pair Starts at 111316185 and ends at 111344247 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TEX29   20370
Cards
Entrez_Gene (NCBI)TEX29  121793  testis expressed 29
AliasesC13orf16; bA474D23.1
GeneCards (Weizmann)TEX29
Ensembl hg19 (Hinxton)ENSG00000153495 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153495 [Gene_View]  chr13:111316185-111344247 [Contig_View]  TEX29 [Vega]
ICGC DataPortalENSG00000153495
TCGA cBioPortalTEX29
AceView (NCBI)TEX29
Genatlas (Paris)TEX29
WikiGenes121793
SOURCE (Princeton)TEX29
Genetics Home Reference (NIH)TEX29
Genomic and cartography
GoldenPath hg38 (UCSC)TEX29  -     chr13:111316185-111344247 +  13q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX29  -     13q34   [Description]    (hg19-Feb_2009)
EnsemblTEX29 - 13q34 [CytoView hg19]  TEX29 - 13q34 [CytoView hg38]
Mapping of homologs : NCBITEX29 [Mapview hg19]  TEX29 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW957098 BC029889 HQ447188 HY035354
RefSeq transcript (Entrez)NM_001303133 NM_152324
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TEX29
Cluster EST : UnigeneHs.210677 [ NCBI ]
CGAP (NCI)Hs.210677
Alternative Splicing GalleryENSG00000153495
Gene ExpressionTEX29 [ NCBI-GEO ]   TEX29 [ EBI - ARRAY_EXPRESS ]   TEX29 [ SEEK ]   TEX29 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX29 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)121793
GTEX Portal (Tissue expression)TEX29
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6K0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6K0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6K0
Splice isoforms : SwissVarQ8N6K0
PhosPhoSitePlusQ8N6K0
Domains : Interpro (EBI)TEX29   
Domain families : Pfam (Sanger)TEX29 (PF15839)   
Domain families : Pfam (NCBI)pfam15839   
Conserved Domain (NCBI)TEX29
DMDM Disease mutations121793
Blocks (Seattle)TEX29
SuperfamilyQ8N6K0
Human Protein AtlasENSG00000153495
Peptide AtlasQ8N6K0
HPRD14603
IPIIPI00167023   IPI00982325   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6K0
IntAct (EBI)Q8N6K0
FunCoupENSG00000153495
BioGRIDTEX29
STRING (EMBL)TEX29
ZODIACTEX29
Ontologies - Pathways
QuickGOQ8N6K0
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTEX29
Atlas of Cancer Signalling NetworkTEX29
Wikipedia pathwaysTEX29
Orthology - Evolution
OrthoDB121793
GeneTree (enSembl)ENSG00000153495
Phylogenetic Trees/Animal Genes : TreeFamTEX29
HOVERGENQ8N6K0
HOGENOMQ8N6K0
Homologs : HomoloGeneTEX29
Homology/Alignments : Family Browser (UCSC)TEX29
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX29 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX29
dbVarTEX29
ClinVarTEX29
1000_GenomesTEX29 
Exome Variant ServerTEX29
ExAC (Exome Aggregation Consortium)TEX29 (select the gene name)
Genetic variants : HAPMAP121793
Genomic Variants (DGV)TEX29 [DGVbeta]
DECIPHERTEX29 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX29 
Mutations
ICGC Data PortalTEX29 
TCGA Data PortalTEX29 
Broad Tumor PortalTEX29
OASIS PortalTEX29 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTEX29
BioMutasearch TEX29
DgiDB (Drug Gene Interaction Database)TEX29
DoCM (Curated mutations)TEX29 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEX29 (select a term)
intoGenTEX29
Cancer3DTEX29(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTEX29
Genetic Testing Registry TEX29
NextProtQ8N6K0 [Medical]
TSGene121793
GENETestsTEX29
Target ValidationTEX29
Huge Navigator TEX29 [HugePedia]
snp3D : Map Gene to Disease121793
BioCentury BCIQTEX29
ClinGenTEX29
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD121793
Chemical/Pharm GKB GenePA134935852
Clinical trialTEX29
Miscellaneous
canSAR (ICR)TEX29 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEX29
EVEXTEX29
GoPubMedTEX29
iHOPTEX29
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:45:18 CEST 2017

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