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TEX29 (testis expressed 29)

Identity

Alias (NCBI)C13orf16
bA474D23.1
HGNC (Hugo) TEX29
HGNC Alias symbbA474D23.1
MGC35169
HGNC Previous nameC13orf16
HGNC Previous namechromosome 13 open reading frame 16
LocusID (NCBI) 121793
Atlas_Id 74638
Location 13q34  [Link to chromosome band 13q34]
Location_base_pair Starts at 111320642 and ends at 111344248 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TEX29   20370
Cards
Entrez_Gene (NCBI)TEX29    testis expressed 29
AliasesC13orf16; bA474D23.1
GeneCards (Weizmann)TEX29
Ensembl hg19 (Hinxton)ENSG00000153495 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153495 [Gene_View]  ENSG00000153495 [Sequence]  chr13:111320642-111344248 [Contig_View]  TEX29 [Vega]
ICGC DataPortalENSG00000153495
TCGA cBioPortalTEX29
AceView (NCBI)TEX29
Genatlas (Paris)TEX29
SOURCE (Princeton)TEX29
Genetics Home Reference (NIH)TEX29
Genomic and cartography
GoldenPath hg38 (UCSC)TEX29  -     chr13:111320642-111344248 +  13q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX29  -     13q34   [Description]    (hg19-Feb_2009)
GoldenPathTEX29 - 13q34 [CytoView hg19]  TEX29 - 13q34 [CytoView hg38]
ImmunoBaseENSG00000153495
Genome Data Viewer NCBITEX29 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AW957098 BC029889 HY035354
RefSeq transcript (Entrez)NM_001303133 NM_152324
Consensus coding sequences : CCDS (NCBI)TEX29
Gene ExpressionTEX29 [ NCBI-GEO ]   TEX29 [ EBI - ARRAY_EXPRESS ]   TEX29 [ SEEK ]   TEX29 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX29 [ Firebrowse - Broad ]
GenevisibleExpression of TEX29 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)121793
GTEX Portal (Tissue expression)TEX29
Human Protein AtlasENSG00000153495-TEX29 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6K0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6K0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6K0
PhosPhoSitePlusQ8N6K0
Domains : Interpro (EBI)TEX29   
Domain families : Pfam (Sanger)TEX29 (PF15839)   
Domain families : Pfam (NCBI)pfam15839   
Conserved Domain (NCBI)TEX29
SuperfamilyQ8N6K0
AlphaFold pdb e-kbQ8N6K0   
Human Protein Atlas [tissue]ENSG00000153495-TEX29 [tissue]
HPRD14603
Protein Interaction databases
DIP (DOE-UCLA)Q8N6K0
IntAct (EBI)Q8N6K0
BioGRIDTEX29
STRING (EMBL)TEX29
ZODIACTEX29
Ontologies - Pathways
QuickGOQ8N6K0
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkTEX29
Atlas of Cancer Signalling NetworkTEX29
Wikipedia pathwaysTEX29
Orthology - Evolution
OrthoDB121793
GeneTree (enSembl)ENSG00000153495
Phylogenetic Trees/Animal Genes : TreeFamTEX29
Homologs : HomoloGeneTEX29
Homology/Alignments : Family Browser (UCSC)TEX29
Gene fusions - Rearrangements
Fusion : QuiverTEX29
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX29 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX29
dbVarTEX29
ClinVarTEX29
MonarchTEX29
1000_GenomesTEX29 
Exome Variant ServerTEX29
GNOMAD BrowserENSG00000153495
Varsome BrowserTEX29
ACMGTEX29 variants
VarityQ8N6K0
Genomic Variants (DGV)TEX29 [DGVbeta]
DECIPHERTEX29 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX29 
Mutations
ICGC Data PortalTEX29 
TCGA Data PortalTEX29 
Broad Tumor PortalTEX29
OASIS PortalTEX29 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEX29  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTEX29
Mutations and Diseases : HGMDTEX29
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTEX29
DgiDB (Drug Gene Interaction Database)TEX29
DoCM (Curated mutations)TEX29
CIViC (Clinical Interpretations of Variants in Cancer)TEX29
Cancer3DTEX29
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTEX29
MedgenTEX29
Genetic Testing Registry TEX29
NextProtQ8N6K0 [Medical]
GENETestsTEX29
Target ValidationTEX29
Huge Navigator TEX29 [HugePedia]
ClinGenTEX29
Clinical trials, drugs, therapy
MyCancerGenomeTEX29
Protein Interactions : CTDTEX29
Pharm GKB GenePA134935852
PharosQ8N6K0
Clinical trialTEX29
Miscellaneous
canSAR (ICR)TEX29
HarmonizomeTEX29
DataMed IndexTEX29
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTEX29
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:17 CEST 2021

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