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TEX30 (testis expressed 30)

Identity

Alias_namesC13orf27
chromosome 13 open reading frame 27
Other alias
HGNC (Hugo) TEX30
LocusID (NCBI) 93081
Atlas_Id 74639
Location 13q33.1  [Link to chromosome band 13q33]
Location_base_pair Starts at 102765888 and ends at 102773821 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TEX30   25188
Cards
Entrez_Gene (NCBI)TEX30  93081  testis expressed 30
AliasesC13orf27
GeneCards (Weizmann)TEX30
Ensembl hg19 (Hinxton)ENSG00000151287 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151287 [Gene_View]  chr13:102765888-102773821 [Contig_View]  TEX30 [Vega]
ICGC DataPortalENSG00000151287
TCGA cBioPortalTEX30
AceView (NCBI)TEX30
Genatlas (Paris)TEX30
WikiGenes93081
SOURCE (Princeton)TEX30
Genetics Home Reference (NIH)TEX30
Genomic and cartography
GoldenPath hg38 (UCSC)TEX30  -     chr13:102765888-102773821 -  13q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX30  -     13q33.1   [Description]    (hg19-Feb_2009)
EnsemblTEX30 - 13q33.1 [CytoView hg19]  TEX30 - 13q33.1 [CytoView hg38]
Mapping of homologs : NCBITEX30 [Mapview hg19]  TEX30 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA401719 AF070559 AK314995 BC015148 BC048011
RefSeq transcript (Entrez)NM_001286775 NM_001286776 NM_138779
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TEX30
Cluster EST : UnigeneHs.398111 [ NCBI ]
CGAP (NCI)Hs.398111
Alternative Splicing GalleryENSG00000151287
Gene ExpressionTEX30 [ NCBI-GEO ]   TEX30 [ EBI - ARRAY_EXPRESS ]   TEX30 [ SEEK ]   TEX30 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX30 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93081
GTEX Portal (Tissue expression)TEX30
Human Protein AtlasENSG00000151287-TEX30 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JUR7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JUR7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JUR7
Splice isoforms : SwissVarQ5JUR7
PhosPhoSitePlusQ5JUR7
Domains : Interpro (EBI)AB_hydrolase    Dienelactn_hydro    NSL3/Tex30   
Domain families : Pfam (Sanger)DLH (PF01738)   
Domain families : Pfam (NCBI)pfam01738   
Conserved Domain (NCBI)TEX30
DMDM Disease mutations93081
Blocks (Seattle)TEX30
SuperfamilyQ5JUR7
Human Protein Atlas [tissue]ENSG00000151287-TEX30 [tissue]
Peptide AtlasQ5JUR7
HPRD14295
IPIIPI00414985   IPI00642671   IPI00553075   IPI00647625   
Protein Interaction databases
DIP (DOE-UCLA)Q5JUR7
IntAct (EBI)Q5JUR7
FunCoupENSG00000151287
BioGRIDTEX30
STRING (EMBL)TEX30
ZODIACTEX30
Ontologies - Pathways
QuickGOQ5JUR7
Ontology : AmiGOhydrolase activity  
Ontology : EGO-EBIhydrolase activity  
NDEx NetworkTEX30
Atlas of Cancer Signalling NetworkTEX30
Wikipedia pathwaysTEX30
Orthology - Evolution
OrthoDB93081
GeneTree (enSembl)ENSG00000151287
Phylogenetic Trees/Animal Genes : TreeFamTEX30
HOVERGENQ5JUR7
HOGENOMQ5JUR7
Homologs : HomoloGeneTEX30
Homology/Alignments : Family Browser (UCSC)TEX30
Gene fusions - Rearrangements
Tumor Fusion PortalTEX30
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX30 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX30
dbVarTEX30
ClinVarTEX30
1000_GenomesTEX30 
Exome Variant ServerTEX30
ExAC (Exome Aggregation Consortium)ENSG00000151287
GNOMAD BrowserENSG00000151287
Genetic variants : HAPMAP93081
Genomic Variants (DGV)TEX30 [DGVbeta]
DECIPHERTEX30 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX30 
Mutations
ICGC Data PortalTEX30 
TCGA Data PortalTEX30 
Broad Tumor PortalTEX30
OASIS PortalTEX30 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEX30  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTEX30
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TEX30
DgiDB (Drug Gene Interaction Database)TEX30
DoCM (Curated mutations)TEX30 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEX30 (select a term)
intoGenTEX30
Cancer3DTEX30(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTEX30
MedgenTEX30
Genetic Testing Registry TEX30
NextProtQ5JUR7 [Medical]
TSGene93081
GENETestsTEX30
Target ValidationTEX30
Huge Navigator TEX30 [HugePedia]
snp3D : Map Gene to Disease93081
BioCentury BCIQTEX30
ClinGenTEX30
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93081
Chemical/Pharm GKB GenePA147358470
Clinical trialTEX30
Miscellaneous
canSAR (ICR)TEX30 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEX30
EVEXTEX30
GoPubMedTEX30
iHOPTEX30
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:29:03 CET 2017

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