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TEX30 (testis expressed 30)

Identity

Alias (NCBI)C13orf27
HGNC (Hugo) TEX30
HGNC Previous nameC13orf27
HGNC Previous namechromosome 13 open reading frame 27
LocusID (NCBI) 93081
Atlas_Id 74639
Location 13q33.1  [Link to chromosome band 13q33]
Location_base_pair Starts at 102765888 and ends at 102773786 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TEX30   25188
Cards
Entrez_Gene (NCBI)TEX30    testis expressed 30
AliasesC13orf27
GeneCards (Weizmann)TEX30
Ensembl hg19 (Hinxton)ENSG00000151287 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151287 [Gene_View]  ENSG00000151287 [Sequence]  chr13:102765888-102773786 [Contig_View]  TEX30 [Vega]
ICGC DataPortalENSG00000151287
TCGA cBioPortalTEX30
AceView (NCBI)TEX30
Genatlas (Paris)TEX30
SOURCE (Princeton)TEX30
Genetics Home Reference (NIH)TEX30
Genomic and cartography
GoldenPath hg38 (UCSC)TEX30  -     chr13:102765888-102773786 -  13q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX30  -     13q33.1   [Description]    (hg19-Feb_2009)
GoldenPathTEX30 - 13q33.1 [CytoView hg19]  TEX30 - 13q33.1 [CytoView hg38]
ImmunoBaseENSG00000151287
Genome Data Viewer NCBITEX30 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA401719 AF070559 AK314995 BC015148 BC048011
RefSeq transcript (Entrez)NM_001286775 NM_001286776 NM_138779
Consensus coding sequences : CCDS (NCBI)TEX30
Gene ExpressionTEX30 [ NCBI-GEO ]   TEX30 [ EBI - ARRAY_EXPRESS ]   TEX30 [ SEEK ]   TEX30 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX30 [ Firebrowse - Broad ]
GenevisibleExpression of TEX30 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93081
GTEX Portal (Tissue expression)TEX30
Human Protein AtlasENSG00000151287-TEX30 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JUR7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JUR7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JUR7
PhosPhoSitePlusQ5JUR7
Domains : Interpro (EBI)AB_hydrolase    Dienelactn_hydro    NSL3/Tex30   
Domain families : Pfam (Sanger)DLH (PF01738)   
Domain families : Pfam (NCBI)pfam01738   
Conserved Domain (NCBI)TEX30
SuperfamilyQ5JUR7
AlphaFold pdb e-kbQ5JUR7   
Human Protein Atlas [tissue]ENSG00000151287-TEX30 [tissue]
HPRD14295
Protein Interaction databases
DIP (DOE-UCLA)Q5JUR7
IntAct (EBI)Q5JUR7
BioGRIDTEX30
STRING (EMBL)TEX30
ZODIACTEX30
Ontologies - Pathways
QuickGOQ5JUR7
Ontology : AmiGOhydrolase activity  
Ontology : EGO-EBIhydrolase activity  
NDEx NetworkTEX30
Atlas of Cancer Signalling NetworkTEX30
Wikipedia pathwaysTEX30
Orthology - Evolution
OrthoDB93081
GeneTree (enSembl)ENSG00000151287
Phylogenetic Trees/Animal Genes : TreeFamTEX30
Homologs : HomoloGeneTEX30
Homology/Alignments : Family Browser (UCSC)TEX30
Gene fusions - Rearrangements
Fusion : QuiverTEX30
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX30 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX30
dbVarTEX30
ClinVarTEX30
MonarchTEX30
1000_GenomesTEX30 
Exome Variant ServerTEX30
GNOMAD BrowserENSG00000151287
Varsome BrowserTEX30
ACMGTEX30 variants
VarityQ5JUR7
Genomic Variants (DGV)TEX30 [DGVbeta]
DECIPHERTEX30 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX30 
Mutations
ICGC Data PortalTEX30 
TCGA Data PortalTEX30 
Broad Tumor PortalTEX30
OASIS PortalTEX30 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEX30  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTEX30
Mutations and Diseases : HGMDTEX30
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTEX30
DgiDB (Drug Gene Interaction Database)TEX30
DoCM (Curated mutations)TEX30
CIViC (Clinical Interpretations of Variants in Cancer)TEX30
Cancer3DTEX30
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTEX30
MedgenTEX30
Genetic Testing Registry TEX30
NextProtQ5JUR7 [Medical]
GENETestsTEX30
Target ValidationTEX30
Huge Navigator TEX30 [HugePedia]
ClinGenTEX30
Clinical trials, drugs, therapy
MyCancerGenomeTEX30
Protein Interactions : CTDTEX30
Pharm GKB GenePA147358470
PharosQ5JUR7
Clinical trialTEX30
Miscellaneous
canSAR (ICR)TEX30
HarmonizomeTEX30
DataMed IndexTEX30
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTEX30
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:17 CEST 2021

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