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TEX35 (testis expressed 35)

Identity

Alias_namesC1orf49
chromosome 1 open reading frame 49
Alias_symbol (synonym)DKFZP564J047
TSC24
Other alias
HGNC (Hugo) TEX35
LocusID (NCBI) 84066
Atlas_Id 74641
Location 1q25.2  [Link to chromosome band 1q25]
Location_base_pair Starts at 178513077 and ends at 178523500 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TEX35   25366
Cards
Entrez_Gene (NCBI)TEX35  84066  testis expressed 35
AliasesC1orf49; TSC24
GeneCards (Weizmann)TEX35
Ensembl hg19 (Hinxton)ENSG00000240021 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000240021 [Gene_View]  chr1:178513077-178523500 [Contig_View]  TEX35 [Vega]
ICGC DataPortalENSG00000240021
TCGA cBioPortalTEX35
AceView (NCBI)TEX35
Genatlas (Paris)TEX35
WikiGenes84066
SOURCE (Princeton)TEX35
Genetics Home Reference (NIH)TEX35
Genomic and cartography
GoldenPath hg38 (UCSC)TEX35  -     chr1:178513077-178523500 +  1q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX35  -     1q25.2   [Description]    (hg19-Feb_2009)
EnsemblTEX35 - 1q25.2 [CytoView hg19]  TEX35 - 1q25.2 [CytoView hg38]
Mapping of homologs : NCBITEX35 [Mapview hg19]  TEX35 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093269 AL136694 AL552172 AM392874 AM393664
RefSeq transcript (Entrez)NM_001170722 NM_001170723 NM_001170724 NM_032126
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TEX35
Cluster EST : UnigeneHs.534501 [ NCBI ]
CGAP (NCI)Hs.534501
Alternative Splicing GalleryENSG00000240021
Gene ExpressionTEX35 [ NCBI-GEO ]   TEX35 [ EBI - ARRAY_EXPRESS ]   TEX35 [ SEEK ]   TEX35 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX35 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84066
GTEX Portal (Tissue expression)TEX35
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T0J7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T0J7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T0J7
Splice isoforms : SwissVarQ5T0J7
PhosPhoSitePlusQ5T0J7
Domains : Interpro (EBI)Tex35   
Domain families : Pfam (Sanger)Tsc35 (PF15079)   
Domain families : Pfam (NCBI)pfam15079   
Conserved Domain (NCBI)TEX35
DMDM Disease mutations84066
Blocks (Seattle)TEX35
SuperfamilyQ5T0J7
Human Protein AtlasENSG00000240021
Peptide AtlasQ5T0J7
HPRD13169
IPIIPI00030237   IPI00217879   IPI00385721   IPI00844334   IPI00954876   IPI00514657   IPI00514942   IPI00641930   IPI00974402   
Protein Interaction databases
DIP (DOE-UCLA)Q5T0J7
IntAct (EBI)Q5T0J7
FunCoupENSG00000240021
BioGRIDTEX35
STRING (EMBL)TEX35
ZODIACTEX35
Ontologies - Pathways
QuickGOQ5T0J7
Ontology : AmiGOnucleus  microtubule cytoskeleton  
Ontology : EGO-EBInucleus  microtubule cytoskeleton  
NDEx NetworkTEX35
Atlas of Cancer Signalling NetworkTEX35
Wikipedia pathwaysTEX35
Orthology - Evolution
OrthoDB84066
GeneTree (enSembl)ENSG00000240021
Phylogenetic Trees/Animal Genes : TreeFamTEX35
HOVERGENQ5T0J7
HOGENOMQ5T0J7
Homologs : HomoloGeneTEX35
Homology/Alignments : Family Browser (UCSC)TEX35
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX35 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX35
dbVarTEX35
ClinVarTEX35
1000_GenomesTEX35 
Exome Variant ServerTEX35
ExAC (Exome Aggregation Consortium)TEX35 (select the gene name)
Genetic variants : HAPMAP84066
Genomic Variants (DGV)TEX35 [DGVbeta]
DECIPHERTEX35 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX35 
Mutations
ICGC Data PortalTEX35 
TCGA Data PortalTEX35 
Broad Tumor PortalTEX35
OASIS PortalTEX35 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEX35  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTEX35
BioMutasearch TEX35
DgiDB (Drug Gene Interaction Database)TEX35
DoCM (Curated mutations)TEX35 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEX35 (select a term)
intoGenTEX35
Cancer3DTEX35(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTEX35
Genetic Testing Registry TEX35
NextProtQ5T0J7 [Medical]
TSGene84066
GENETestsTEX35
Target ValidationTEX35
Huge Navigator TEX35 [HugePedia]
snp3D : Map Gene to Disease84066
BioCentury BCIQTEX35
ClinGenTEX35
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84066
Chemical/Pharm GKB GenePA134904440
Clinical trialTEX35
Miscellaneous
canSAR (ICR)TEX35 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEX35
EVEXTEX35
GoPubMedTEX35
iHOPTEX35
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:18 CEST 2017

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