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TEX35 (testis expressed 35)

Identity

Alias (NCBI)C1orf49
TSC24
HGNC (Hugo) TEX35
HGNC Alias symbDKFZP564J047
TSC24
HGNC Alias nameTestis-Specific Conserved gene 24kDa
HGNC Previous nameC1orf49
HGNC Previous namechromosome 1 open reading frame 49
LocusID (NCBI) 84066
Atlas_Id 74641
Location 1q25.2  [Link to chromosome band 1q25]
Location_base_pair Starts at 178513109 and ends at 178522650 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TEX35   25366
Cards
Entrez_Gene (NCBI)TEX35    testis expressed 35
AliasesC1orf49; TSC24
GeneCards (Weizmann)TEX35
Ensembl hg19 (Hinxton)ENSG00000240021 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000240021 [Gene_View]  ENSG00000240021 [Sequence]  chr1:178513109-178522650 [Contig_View]  TEX35 [Vega]
ICGC DataPortalENSG00000240021
TCGA cBioPortalTEX35
AceView (NCBI)TEX35
Genatlas (Paris)TEX35
SOURCE (Princeton)TEX35
Genetics Home Reference (NIH)TEX35
Genomic and cartography
GoldenPath hg38 (UCSC)TEX35  -     chr1:178513109-178522650 +  1q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX35  -     1q25.2   [Description]    (hg19-Feb_2009)
GoldenPathTEX35 - 1q25.2 [CytoView hg19]  TEX35 - 1q25.2 [CytoView hg38]
ImmunoBaseENSG00000240021
Genome Data Viewer NCBITEX35 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK093269 AL136694 AL552172 AW340027 AW628627
RefSeq transcript (Entrez)NM_001170722 NM_001170723 NM_001170724 NM_032126
Consensus coding sequences : CCDS (NCBI)TEX35
Gene ExpressionTEX35 [ NCBI-GEO ]   TEX35 [ EBI - ARRAY_EXPRESS ]   TEX35 [ SEEK ]   TEX35 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX35 [ Firebrowse - Broad ]
GenevisibleExpression of TEX35 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84066
GTEX Portal (Tissue expression)TEX35
Human Protein AtlasENSG00000240021-TEX35 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T0J7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T0J7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T0J7
PhosPhoSitePlusQ5T0J7
Domains : Interpro (EBI)Tex35   
Domain families : Pfam (Sanger)Tsc35 (PF15079)   
Domain families : Pfam (NCBI)pfam15079   
Conserved Domain (NCBI)TEX35
SuperfamilyQ5T0J7
AlphaFold pdb e-kbQ5T0J7   
Human Protein Atlas [tissue]ENSG00000240021-TEX35 [tissue]
HPRD13169
Protein Interaction databases
DIP (DOE-UCLA)Q5T0J7
IntAct (EBI)Q5T0J7
BioGRIDTEX35
STRING (EMBL)TEX35
ZODIACTEX35
Ontologies - Pathways
QuickGOQ5T0J7
Ontology : AmiGOnucleus  nucleus  microtubule cytoskeleton  
Ontology : EGO-EBInucleus  nucleus  microtubule cytoskeleton  
NDEx NetworkTEX35
Atlas of Cancer Signalling NetworkTEX35
Wikipedia pathwaysTEX35
Orthology - Evolution
OrthoDB84066
GeneTree (enSembl)ENSG00000240021
Phylogenetic Trees/Animal Genes : TreeFamTEX35
Homologs : HomoloGeneTEX35
Homology/Alignments : Family Browser (UCSC)TEX35
Gene fusions - Rearrangements
Fusion : QuiverTEX35
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX35 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX35
dbVarTEX35
ClinVarTEX35
MonarchTEX35
1000_GenomesTEX35 
Exome Variant ServerTEX35
GNOMAD BrowserENSG00000240021
Varsome BrowserTEX35
ACMGTEX35 variants
VarityQ5T0J7
Genomic Variants (DGV)TEX35 [DGVbeta]
DECIPHERTEX35 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX35 
Mutations
ICGC Data PortalTEX35 
TCGA Data PortalTEX35 
Broad Tumor PortalTEX35
OASIS PortalTEX35 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEX35  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTEX35
Mutations and Diseases : HGMDTEX35
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTEX35
DgiDB (Drug Gene Interaction Database)TEX35
DoCM (Curated mutations)TEX35
CIViC (Clinical Interpretations of Variants in Cancer)TEX35
Cancer3DTEX35
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTEX35
MedgenTEX35
Genetic Testing Registry TEX35
NextProtQ5T0J7 [Medical]
GENETestsTEX35
Target ValidationTEX35
Huge Navigator TEX35 [HugePedia]
ClinGenTEX35
Clinical trials, drugs, therapy
MyCancerGenomeTEX35
Protein Interactions : CTDTEX35
Pharm GKB GenePA134904440
PharosQ5T0J7
Clinical trialTEX35
Miscellaneous
canSAR (ICR)TEX35
HarmonizomeTEX35
DataMed IndexTEX35
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTEX35
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:18 CEST 2021

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