Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TEX36 (testis expressed 36)

Identity

Alias_namesC10orf122
chromosome 10 open reading frame 122
Alias_symbol (synonym)bA383C5.1
Other alias
HGNC (Hugo) TEX36
LocusID (NCBI) 387718
Atlas_Id 74642
Location 10q26.13  [Link to chromosome band 10q26]
Location_base_pair Starts at 125655694 and ends at 125683144 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TEX36   31653
Cards
Entrez_Gene (NCBI)TEX36  387718  testis expressed 36
AliasesC10orf122; bA383C5.1
GeneCards (Weizmann)TEX36
Ensembl hg19 (Hinxton)ENSG00000175018 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175018 [Gene_View]  chr10:125655694-125683144 [Contig_View]  TEX36 [Vega]
ICGC DataPortalENSG00000175018
TCGA cBioPortalTEX36
AceView (NCBI)TEX36
Genatlas (Paris)TEX36
WikiGenes387718
SOURCE (Princeton)TEX36
Genetics Home Reference (NIH)TEX36
Genomic and cartography
GoldenPath hg38 (UCSC)TEX36  -     chr10:125655694-125683144 -  10q26.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX36  -     10q26.13   [Description]    (hg19-Feb_2009)
EnsemblTEX36 - 10q26.13 [CytoView hg19]  TEX36 - 10q26.13 [CytoView hg38]
Mapping of homologs : NCBITEX36 [Mapview hg19]  TEX36 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA977508 AK131010 BC062717 BC127766 BC127767
RefSeq transcript (Entrez)NM_001128202 NM_001318133
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TEX36
Cluster EST : UnigeneHs.148259 [ NCBI ]
CGAP (NCI)Hs.148259
Alternative Splicing GalleryENSG00000175018
Gene ExpressionTEX36 [ NCBI-GEO ]   TEX36 [ EBI - ARRAY_EXPRESS ]   TEX36 [ SEEK ]   TEX36 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX36 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387718
GTEX Portal (Tissue expression)TEX36
Human Protein AtlasENSG00000175018-TEX36 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VZQ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VZQ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VZQ5
Splice isoforms : SwissVarQ5VZQ5
PhosPhoSitePlusQ5VZQ5
Domains : Interpro (EBI)HDNR   
Domain families : Pfam (Sanger)HDNR (PF15115)   
Domain families : Pfam (NCBI)pfam15115   
Conserved Domain (NCBI)TEX36
DMDM Disease mutations387718
Blocks (Seattle)TEX36
SuperfamilyQ5VZQ5
Human Protein Atlas [tissue]ENSG00000175018-TEX36 [tissue]
Peptide AtlasQ5VZQ5
IPIIPI00375813   IPI00980506   IPI00979914   
Protein Interaction databases
DIP (DOE-UCLA)Q5VZQ5
IntAct (EBI)Q5VZQ5
FunCoupENSG00000175018
BioGRIDTEX36
STRING (EMBL)TEX36
ZODIACTEX36
Ontologies - Pathways
QuickGOQ5VZQ5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTEX36
Atlas of Cancer Signalling NetworkTEX36
Wikipedia pathwaysTEX36
Orthology - Evolution
OrthoDB387718
GeneTree (enSembl)ENSG00000175018
Phylogenetic Trees/Animal Genes : TreeFamTEX36
HOVERGENQ5VZQ5
HOGENOMQ5VZQ5
Homologs : HomoloGeneTEX36
Homology/Alignments : Family Browser (UCSC)TEX36
Gene fusions - Rearrangements
Fusion: Tumor Portal TEX36
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX36 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX36
dbVarTEX36
ClinVarTEX36
1000_GenomesTEX36 
Exome Variant ServerTEX36
ExAC (Exome Aggregation Consortium)ENSG00000175018
GNOMAD BrowserENSG00000175018
Genetic variants : HAPMAP387718
Genomic Variants (DGV)TEX36 [DGVbeta]
DECIPHERTEX36 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX36 
Mutations
ICGC Data PortalTEX36 
TCGA Data PortalTEX36 
Broad Tumor PortalTEX36
OASIS PortalTEX36 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTEX36
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TEX36
DgiDB (Drug Gene Interaction Database)TEX36
DoCM (Curated mutations)TEX36 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEX36 (select a term)
intoGenTEX36
Cancer3DTEX36(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTEX36
Genetic Testing Registry TEX36
NextProtQ5VZQ5 [Medical]
TSGene387718
GENETestsTEX36
Target ValidationTEX36
Huge Navigator TEX36 [HugePedia]
snp3D : Map Gene to Disease387718
BioCentury BCIQTEX36
ClinGenTEX36
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387718
Chemical/Pharm GKB GenePA134969142
Clinical trialTEX36
Miscellaneous
canSAR (ICR)TEX36 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEX36
EVEXTEX36
GoPubMedTEX36
iHOPTEX36
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:32:11 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.