Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TEX36 (testis expressed 36)

Identity

Alias (NCBI)C10orf122
bA383C5.1
HGNC (Hugo) TEX36
HGNC Alias symbbA383C5.1
HGNC Previous nameC10orf122
HGNC Previous namechromosome 10 open reading frame 122
LocusID (NCBI) 387718
Atlas_Id 74642
Location 10q26.13  [Link to chromosome band 10q26]
Location_base_pair Starts at 125576522 and ends at 125683163 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TEX36   31653
Cards
Entrez_Gene (NCBI)TEX36    testis expressed 36
AliasesC10orf122; bA383C5.1
GeneCards (Weizmann)TEX36
Ensembl hg19 (Hinxton)ENSG00000175018 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175018 [Gene_View]  ENSG00000175018 [Sequence]  chr10:125576522-125683163 [Contig_View]  TEX36 [Vega]
ICGC DataPortalENSG00000175018
TCGA cBioPortalTEX36
AceView (NCBI)TEX36
Genatlas (Paris)TEX36
SOURCE (Princeton)TEX36
Genetics Home Reference (NIH)TEX36
Genomic and cartography
GoldenPath hg38 (UCSC)TEX36  -     chr10:125576522-125683163 -  10q26.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX36  -     10q26.13   [Description]    (hg19-Feb_2009)
GoldenPathTEX36 - 10q26.13 [CytoView hg19]  TEX36 - 10q26.13 [CytoView hg38]
ImmunoBaseENSG00000175018
Genome Data Viewer NCBITEX36 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA977508 AK131010 BC062717 BC127766 BC127767
RefSeq transcript (Entrez)NM_001128202 NM_001318133
Consensus coding sequences : CCDS (NCBI)TEX36
Gene ExpressionTEX36 [ NCBI-GEO ]   TEX36 [ EBI - ARRAY_EXPRESS ]   TEX36 [ SEEK ]   TEX36 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX36 [ Firebrowse - Broad ]
GenevisibleExpression of TEX36 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387718
GTEX Portal (Tissue expression)TEX36
Human Protein AtlasENSG00000175018-TEX36 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VZQ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VZQ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VZQ5
PhosPhoSitePlusQ5VZQ5
Domains : Interpro (EBI)HDNR   
Domain families : Pfam (Sanger)HDNR (PF15115)   
Domain families : Pfam (NCBI)pfam15115   
Conserved Domain (NCBI)TEX36
SuperfamilyQ5VZQ5
AlphaFold pdb e-kbQ5VZQ5   
Human Protein Atlas [tissue]ENSG00000175018-TEX36 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q5VZQ5
IntAct (EBI)Q5VZQ5
BioGRIDTEX36
STRING (EMBL)TEX36
ZODIACTEX36
Ontologies - Pathways
QuickGOQ5VZQ5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTEX36
Atlas of Cancer Signalling NetworkTEX36
Wikipedia pathwaysTEX36
Orthology - Evolution
OrthoDB387718
GeneTree (enSembl)ENSG00000175018
Phylogenetic Trees/Animal Genes : TreeFamTEX36
Homologs : HomoloGeneTEX36
Homology/Alignments : Family Browser (UCSC)TEX36
Gene fusions - Rearrangements
Fusion : QuiverTEX36
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX36 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX36
dbVarTEX36
ClinVarTEX36
MonarchTEX36
1000_GenomesTEX36 
Exome Variant ServerTEX36
GNOMAD BrowserENSG00000175018
Varsome BrowserTEX36
ACMGTEX36 variants
VarityQ5VZQ5
Genomic Variants (DGV)TEX36 [DGVbeta]
DECIPHERTEX36 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX36 
Mutations
ICGC Data PortalTEX36 
TCGA Data PortalTEX36 
Broad Tumor PortalTEX36
OASIS PortalTEX36 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEX36  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTEX36
Mutations and Diseases : HGMDTEX36
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTEX36
DgiDB (Drug Gene Interaction Database)TEX36
DoCM (Curated mutations)TEX36
CIViC (Clinical Interpretations of Variants in Cancer)TEX36
Cancer3DTEX36
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTEX36
MedgenTEX36
Genetic Testing Registry TEX36
NextProtQ5VZQ5 [Medical]
GENETestsTEX36
Target ValidationTEX36
Huge Navigator TEX36 [HugePedia]
ClinGenTEX36
Clinical trials, drugs, therapy
MyCancerGenomeTEX36
Protein Interactions : CTDTEX36
Pharm GKB GenePA134969142
PharosQ5VZQ5
Clinical trialTEX36
Miscellaneous
canSAR (ICR)TEX36
HarmonizomeTEX36
DataMed IndexTEX36
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTEX36
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:25:18 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.