Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TEX37 (testis expressed 37)

Identity

Alias_namesC2orf51
chromosome 2 open reading frame 51
Alias_symbol (synonym)FLJ25369
TSC21
Other alias
HGNC (Hugo) TEX37
LocusID (NCBI) 200523
Atlas_Id 74644
Location 2p11.2  [Link to chromosome band 2p11]
Location_base_pair Starts at 88824169 and ends at 88829103 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TEX37   26341
Cards
Entrez_Gene (NCBI)TEX37  200523  testis expressed 37
AliasesC2orf51; TSC21
GeneCards (Weizmann)TEX37
Ensembl hg19 (Hinxton)ENSG00000172073 [Gene_View]  chr2:88824169-88829103 [Contig_View]  TEX37 [Vega]
Ensembl hg38 (Hinxton)ENSG00000172073 [Gene_View]  chr2:88824169-88829103 [Contig_View]  TEX37 [Vega]
ICGC DataPortalENSG00000172073
TCGA cBioPortalTEX37
AceView (NCBI)TEX37
Genatlas (Paris)TEX37
WikiGenes200523
SOURCE (Princeton)TEX37
Genetics Home Reference (NIH)TEX37
Genomic and cartography
GoldenPath hg19 (UCSC)TEX37  -     chr2:88824169-88829103 +  2p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TEX37  -     2p11.2   [Description]    (hg38-Dec_2013)
EnsemblTEX37 - 2p11.2 [CytoView hg19]  TEX37 - 2p11.2 [CytoView hg38]
Mapping of homologs : NCBITEX37 [Mapview hg19]  TEX37 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK058098 AW104588 BC029522 JF432722
RefSeq transcript (Entrez)NM_152670
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)TEX37
Cluster EST : UnigeneHs.132104 [ NCBI ]
CGAP (NCI)Hs.132104
Alternative Splicing GalleryENSG00000172073
Gene ExpressionTEX37 [ NCBI-GEO ]   TEX37 [ EBI - ARRAY_EXPRESS ]   TEX37 [ SEEK ]   TEX37 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX37 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200523
GTEX Portal (Tissue expression)TEX37
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LM6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LM6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LM6
Splice isoforms : SwissVarQ96LM6
PhosPhoSitePlusQ96LM6
Domains : Interpro (EBI)TEX37   
Domain families : Pfam (Sanger)TSC21 (PF15217)   
Domain families : Pfam (NCBI)pfam15217   
Conserved Domain (NCBI)TEX37
DMDM Disease mutations200523
Blocks (Seattle)TEX37
SuperfamilyQ96LM6
Human Protein AtlasENSG00000172073
Peptide AtlasQ96LM6
HPRD08688
IPIIPI00065086   
Protein Interaction databases
DIP (DOE-UCLA)Q96LM6
IntAct (EBI)Q96LM6
FunCoupENSG00000172073
BioGRIDTEX37
STRING (EMBL)TEX37
ZODIACTEX37
Ontologies - Pathways
QuickGOQ96LM6
Ontology : AmiGOprotein binding  nucleus  
Ontology : EGO-EBIprotein binding  nucleus  
NDEx NetworkTEX37
Atlas of Cancer Signalling NetworkTEX37
Wikipedia pathwaysTEX37
Orthology - Evolution
OrthoDB200523
GeneTree (enSembl)ENSG00000172073
Phylogenetic Trees/Animal Genes : TreeFamTEX37
HOVERGENQ96LM6
HOGENOMQ96LM6
Homologs : HomoloGeneTEX37
Homology/Alignments : Family Browser (UCSC)TEX37
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX37 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX37
dbVarTEX37
ClinVarTEX37
1000_GenomesTEX37 
Exome Variant ServerTEX37
ExAC (Exome Aggregation Consortium)TEX37 (select the gene name)
Genetic variants : HAPMAP200523
Genomic Variants (DGV)TEX37 [DGVbeta]
DECIPHER (Syndromes)2:88824169-88829103  ENSG00000172073
CONAN: Copy Number AnalysisTEX37 
Mutations
ICGC Data PortalTEX37 
TCGA Data PortalTEX37 
Broad Tumor PortalTEX37
OASIS PortalTEX37 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTEX37
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TEX37
DgiDB (Drug Gene Interaction Database)TEX37
DoCM (Curated mutations)TEX37 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEX37 (select a term)
intoGenTEX37
Cancer3DTEX37(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTEX37
Genetic Testing Registry TEX37
NextProtQ96LM6 [Medical]
TSGene200523
GENETestsTEX37
Huge Navigator TEX37 [HugePedia]
snp3D : Map Gene to Disease200523
BioCentury BCIQTEX37
ClinGenTEX37
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200523
Chemical/Pharm GKB GenePA162379191
Clinical trialTEX37
Miscellaneous
canSAR (ICR)TEX37 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEX37
EVEXTEX37
GoPubMedTEX37
iHOPTEX37
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:47:55 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.