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TEX37 (testis expressed 37)

Identity

Alias (NCBI)C2orf51
TSC21
HGNC (Hugo) TEX37
HGNC Alias symbFLJ25369
TSC21
HGNC Alias nameTestis-Specific Conserved gene 21kDa
HGNC Previous nameC2orf51
HGNC Previous namechromosome 2 open reading frame 51
LocusID (NCBI) 200523
Atlas_Id 74644
Location 2p11.2  [Link to chromosome band 2p11]
Location_base_pair Starts at 88524649 and ends at 88529585 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TEX37   26341
Cards
Entrez_Gene (NCBI)TEX37    testis expressed 37
AliasesC2orf51; TSC21
GeneCards (Weizmann)TEX37
Ensembl hg19 (Hinxton)ENSG00000172073 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172073 [Gene_View]  ENSG00000172073 [Sequence]  chr2:88524649-88529585 [Contig_View]  TEX37 [Vega]
ICGC DataPortalENSG00000172073
TCGA cBioPortalTEX37
AceView (NCBI)TEX37
Genatlas (Paris)TEX37
SOURCE (Princeton)TEX37
Genetics Home Reference (NIH)TEX37
Genomic and cartography
GoldenPath hg38 (UCSC)TEX37  -     chr2:88524649-88529585 +  2p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX37  -     2p11.2   [Description]    (hg19-Feb_2009)
GoldenPathTEX37 - 2p11.2 [CytoView hg19]  TEX37 - 2p11.2 [CytoView hg38]
ImmunoBaseENSG00000172073
Genome Data Viewer NCBITEX37 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK058098 AW104588 BC029522 HM005600
RefSeq transcript (Entrez)NM_152670
Consensus coding sequences : CCDS (NCBI)TEX37
Gene ExpressionTEX37 [ NCBI-GEO ]   TEX37 [ EBI - ARRAY_EXPRESS ]   TEX37 [ SEEK ]   TEX37 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX37 [ Firebrowse - Broad ]
GenevisibleExpression of TEX37 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200523
GTEX Portal (Tissue expression)TEX37
Human Protein AtlasENSG00000172073-TEX37 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LM6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LM6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LM6
PhosPhoSitePlusQ96LM6
Domains : Interpro (EBI)TEX37   
Domain families : Pfam (Sanger)TSC21 (PF15217)   
Domain families : Pfam (NCBI)pfam15217   
Conserved Domain (NCBI)TEX37
SuperfamilyQ96LM6
AlphaFold pdb e-kbQ96LM6   
Human Protein Atlas [tissue]ENSG00000172073-TEX37 [tissue]
HPRD08688
Protein Interaction databases
DIP (DOE-UCLA)Q96LM6
IntAct (EBI)Q96LM6
BioGRIDTEX37
STRING (EMBL)TEX37
ZODIACTEX37
Ontologies - Pathways
QuickGOQ96LM6
Ontology : AmiGOprotein binding  nucleus  cytoplasm  cytoplasm  cytosol  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  cytoplasm  cytosol  
NDEx NetworkTEX37
Atlas of Cancer Signalling NetworkTEX37
Wikipedia pathwaysTEX37
Orthology - Evolution
OrthoDB200523
GeneTree (enSembl)ENSG00000172073
Phylogenetic Trees/Animal Genes : TreeFamTEX37
Homologs : HomoloGeneTEX37
Homology/Alignments : Family Browser (UCSC)TEX37
Gene fusions - Rearrangements
Fusion : QuiverTEX37
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX37 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX37
dbVarTEX37
ClinVarTEX37
MonarchTEX37
1000_GenomesTEX37 
Exome Variant ServerTEX37
GNOMAD BrowserENSG00000172073
Varsome BrowserTEX37
ACMGTEX37 variants
VarityQ96LM6
Genomic Variants (DGV)TEX37 [DGVbeta]
DECIPHERTEX37 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX37 
Mutations
ICGC Data PortalTEX37 
TCGA Data PortalTEX37 
Broad Tumor PortalTEX37
OASIS PortalTEX37 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEX37  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTEX37
Mutations and Diseases : HGMDTEX37
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTEX37
DgiDB (Drug Gene Interaction Database)TEX37
DoCM (Curated mutations)TEX37
CIViC (Clinical Interpretations of Variants in Cancer)TEX37
Cancer3DTEX37
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTEX37
MedgenTEX37
Genetic Testing Registry TEX37
NextProtQ96LM6 [Medical]
GENETestsTEX37
Target ValidationTEX37
Huge Navigator TEX37 [HugePedia]
ClinGenTEX37
Clinical trials, drugs, therapy
MyCancerGenomeTEX37
Protein Interactions : CTDTEX37
Pharm GKB GenePA162379191
PharosQ96LM6
Clinical trialTEX37
Miscellaneous
canSAR (ICR)TEX37
HarmonizomeTEX37
DataMed IndexTEX37
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTEX37
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:18 CEST 2021

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