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TEX38 (testis expressed 38)

Identity

Alias_namesC1orf223
ATPAF1-AS1
chromosome 1 open reading frame 223
ATPAF1 antisense RNA 1 (non-protein coding)
ATPAF1 antisense RNA 1
Alias_symbol (synonym)LOC374973
THEG4
Other alias
HGNC (Hugo) TEX38
LocusID (NCBI) 374973
Atlas_Id 74645
Location 1p33  [Link to chromosome band 1p33]
Location_base_pair Starts at 46671833 and ends at 46673584 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TEX38   29589
Cards
Entrez_Gene (NCBI)TEX38  374973  testis expressed 38
AliasesATPAF1-AS1; C1orf223; THEG4
GeneCards (Weizmann)TEX38
Ensembl hg19 (Hinxton)ENSG00000186118 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186118 [Gene_View]  chr1:46671833-46673584 [Contig_View]  TEX38 [Vega]
ICGC DataPortalENSG00000186118
TCGA cBioPortalTEX38
AceView (NCBI)TEX38
Genatlas (Paris)TEX38
WikiGenes374973
SOURCE (Princeton)TEX38
Genetics Home Reference (NIH)TEX38
Genomic and cartography
GoldenPath hg38 (UCSC)TEX38  -     chr1:46671833-46673584 +  1p33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX38  -     1p33   [Description]    (hg19-Feb_2009)
EnsemblTEX38 - 1p33 [CytoView hg19]  TEX38 - 1p33 [CytoView hg38]
Mapping of homologs : NCBITEX38 [Mapview hg19]  TEX38 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI828862 BC057818 BC067853 BC126318 BC144026
RefSeq transcript (Entrez)NM_001145474 NM_001300863 NM_001300864
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TEX38
Cluster EST : UnigeneHs.443299 [ NCBI ]
CGAP (NCI)Hs.443299
Alternative Splicing GalleryENSG00000186118
Gene ExpressionTEX38 [ NCBI-GEO ]   TEX38 [ EBI - ARRAY_EXPRESS ]   TEX38 [ SEEK ]   TEX38 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX38 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374973
GTEX Portal (Tissue expression)TEX38
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PEX7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PEX7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PEX7
Splice isoforms : SwissVarQ6PEX7
PhosPhoSitePlusQ6PEX7
Domains : Interpro (EBI)TEX38   
Domain families : Pfam (Sanger)THEG4 (PF15834)   
Domain families : Pfam (NCBI)pfam15834   
Conserved Domain (NCBI)TEX38
DMDM Disease mutations374973
Blocks (Seattle)TEX38
SuperfamilyQ6PEX7
Human Protein AtlasENSG00000186118
Peptide AtlasQ6PEX7
IPIIPI00885073   
Protein Interaction databases
DIP (DOE-UCLA)Q6PEX7
IntAct (EBI)Q6PEX7
FunCoupENSG00000186118
BioGRIDTEX38
STRING (EMBL)TEX38
ZODIACTEX38
Ontologies - Pathways
QuickGOQ6PEX7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTEX38
Atlas of Cancer Signalling NetworkTEX38
Wikipedia pathwaysTEX38
Orthology - Evolution
OrthoDB374973
GeneTree (enSembl)ENSG00000186118
Phylogenetic Trees/Animal Genes : TreeFamTEX38
HOVERGENQ6PEX7
HOGENOMQ6PEX7
Homologs : HomoloGeneTEX38
Homology/Alignments : Family Browser (UCSC)TEX38
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX38 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX38
dbVarTEX38
ClinVarTEX38
1000_GenomesTEX38 
Exome Variant ServerTEX38
ExAC (Exome Aggregation Consortium)TEX38 (select the gene name)
Genetic variants : HAPMAP374973
Genomic Variants (DGV)TEX38 [DGVbeta]
DECIPHERTEX38 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX38 
Mutations
ICGC Data PortalTEX38 
TCGA Data PortalTEX38 
Broad Tumor PortalTEX38
OASIS PortalTEX38 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTEX38
BioMutasearch TEX38
DgiDB (Drug Gene Interaction Database)TEX38
DoCM (Curated mutations)TEX38 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEX38 (select a term)
intoGenTEX38
Cancer3DTEX38(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTEX38
Genetic Testing Registry TEX38
NextProtQ6PEX7 [Medical]
TSGene374973
GENETestsTEX38
Target ValidationTEX38
Huge Navigator TEX38 [HugePedia]
snp3D : Map Gene to Disease374973
BioCentury BCIQTEX38
ClinGenTEX38
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374973
Chemical/Pharm GKB GenePA162378937
Clinical trialTEX38
Miscellaneous
canSAR (ICR)TEX38 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEX38
EVEXTEX38
GoPubMedTEX38
iHOPTEX38
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:45:20 CEST 2017

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