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TEX38 (testis expressed 38)

Identity

Alias (NCBI)ATPAF1-AS1
C1orf223
THEG4
HGNC (Hugo) TEX38
HGNC Alias symbLOC374973
THEG4
HGNC Alias nametestis highly expressed protein 4
HGNC Previous nameC1orf223
 ATPAF1-AS1
HGNC Previous namechromosome 1 open reading frame 223
 ATPAF1 antisense RNA 1 (non-protein coding)
 ATPAF1 antisense RNA 1
LocusID (NCBI) 374973
Atlas_Id 74645
Location 1p33  [Link to chromosome band 1p33]
Location_base_pair Starts at 46671854 and ends at 46673584 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TEX38   29589
Cards
Entrez_Gene (NCBI)TEX38    testis expressed 38
AliasesATPAF1-AS1; C1orf223; THEG4
GeneCards (Weizmann)TEX38
Ensembl hg19 (Hinxton)ENSG00000186118 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186118 [Gene_View]  ENSG00000186118 [Sequence]  chr1:46671854-46673584 [Contig_View]  TEX38 [Vega]
ICGC DataPortalENSG00000186118
TCGA cBioPortalTEX38
AceView (NCBI)TEX38
Genatlas (Paris)TEX38
SOURCE (Princeton)TEX38
Genetics Home Reference (NIH)TEX38
Genomic and cartography
GoldenPath hg38 (UCSC)TEX38  -     chr1:46671854-46673584 +  1p33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX38  -     1p33   [Description]    (hg19-Feb_2009)
GoldenPathTEX38 - 1p33 [CytoView hg19]  TEX38 - 1p33 [CytoView hg38]
ImmunoBaseENSG00000186118
Genome Data Viewer NCBITEX38 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI828862 BC057818 BC067853 BC126318 BC144026
RefSeq transcript (Entrez)NM_001145474 NM_001300863 NM_001300864
Consensus coding sequences : CCDS (NCBI)TEX38
Gene ExpressionTEX38 [ NCBI-GEO ]   TEX38 [ EBI - ARRAY_EXPRESS ]   TEX38 [ SEEK ]   TEX38 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX38 [ Firebrowse - Broad ]
GenevisibleExpression of TEX38 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374973
GTEX Portal (Tissue expression)TEX38
Human Protein AtlasENSG00000186118-TEX38 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PEX7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PEX7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PEX7
PhosPhoSitePlusQ6PEX7
Domains : Interpro (EBI)TEX38   
Domain families : Pfam (Sanger)THEG4 (PF15834)   
Domain families : Pfam (NCBI)pfam15834   
Conserved Domain (NCBI)TEX38
SuperfamilyQ6PEX7
AlphaFold pdb e-kbQ6PEX7   
Human Protein Atlas [tissue]ENSG00000186118-TEX38 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q6PEX7
IntAct (EBI)Q6PEX7
BioGRIDTEX38
STRING (EMBL)TEX38
ZODIACTEX38
Ontologies - Pathways
QuickGOQ6PEX7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTEX38
Atlas of Cancer Signalling NetworkTEX38
Wikipedia pathwaysTEX38
Orthology - Evolution
OrthoDB374973
GeneTree (enSembl)ENSG00000186118
Phylogenetic Trees/Animal Genes : TreeFamTEX38
Homologs : HomoloGeneTEX38
Homology/Alignments : Family Browser (UCSC)TEX38
Gene fusions - Rearrangements
Fusion : QuiverTEX38
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX38 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX38
dbVarTEX38
ClinVarTEX38
MonarchTEX38
1000_GenomesTEX38 
Exome Variant ServerTEX38
GNOMAD BrowserENSG00000186118
Varsome BrowserTEX38
ACMGTEX38 variants
VarityQ6PEX7
Genomic Variants (DGV)TEX38 [DGVbeta]
DECIPHERTEX38 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX38 
Mutations
ICGC Data PortalTEX38 
TCGA Data PortalTEX38 
Broad Tumor PortalTEX38
OASIS PortalTEX38 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEX38  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTEX38
Mutations and Diseases : HGMDTEX38
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTEX38
DgiDB (Drug Gene Interaction Database)TEX38
DoCM (Curated mutations)TEX38
CIViC (Clinical Interpretations of Variants in Cancer)TEX38
Cancer3DTEX38
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTEX38
MedgenTEX38
Genetic Testing Registry TEX38
NextProtQ6PEX7 [Medical]
GENETestsTEX38
Target ValidationTEX38
Huge Navigator TEX38 [HugePedia]
ClinGenTEX38
Clinical trials, drugs, therapy
MyCancerGenomeTEX38
Protein Interactions : CTDTEX38
Pharm GKB GenePA162378937
PharosQ6PEX7
Clinical trialTEX38
Miscellaneous
canSAR (ICR)TEX38
HarmonizomeTEX38
DataMed IndexTEX38
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTEX38
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:18 CEST 2021

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