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TEX40 (testis expressed 40)

Identity

Alias_namesC11orf20
chromosome 11 open reading frame 20
Alias_symbol (synonym)DKFZP566E164
Other alias
HGNC (Hugo) TEX40
LocusID (NCBI) 25858
Atlas_Id 53481
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 64067863 and ends at 64072239 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ESRRA (11q13.1) / TEX40 (11q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TEX40   19231
Cards
Entrez_Gene (NCBI)TEX40  25858  testis expressed 40
AliasesC11orf20
GeneCards (Weizmann)TEX40
Ensembl hg19 (Hinxton) [Gene_View]  chr11:64067863-64072239 [Contig_View]  TEX40 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:64067863-64072239 [Contig_View]  TEX40 [Vega]
TCGA cBioPortalTEX40
AceView (NCBI)TEX40
Genatlas (Paris)TEX40
WikiGenes25858
SOURCE (Princeton)TEX40
Genetics Home Reference (NIH)TEX40
Genomic and cartography
GoldenPath hg19 (UCSC)TEX40  -     chr11:64067863-64072239 +  11q13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TEX40  -     11q13.1   [Description]    (hg38-Dec_2013)
EnsemblTEX40 - 11q13.1 [CytoView hg19]  TEX40 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBITEX40 [Mapview hg19]  TEX40 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL117564 AM392988
RefSeq transcript (Entrez)NM_001039496
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)TEX40
Cluster EST : UnigeneHs.97174 [ NCBI ]
CGAP (NCI)Hs.97174
Gene ExpressionTEX40 [ NCBI-GEO ]   TEX40 [ EBI - ARRAY_EXPRESS ]   TEX40 [ SEEK ]   TEX40 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX40 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25858
GTEX Portal (Tissue expression)TEX40
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NTU4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NTU4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NTU4
Splice isoforms : SwissVarQ9NTU4
PhosPhoSitePlusQ9NTU4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TEX40
DMDM Disease mutations25858
Blocks (Seattle)TEX40
SuperfamilyQ9NTU4
Peptide AtlasQ9NTU4
IPIIPI00003330   IPI01010869   
Protein Interaction databases
DIP (DOE-UCLA)Q9NTU4
IntAct (EBI)Q9NTU4
BioGRIDTEX40
STRING (EMBL)TEX40
ZODIACTEX40
Ontologies - Pathways
QuickGOQ9NTU4
Ontology : AmiGOcytoplasm  male meiosis  spermatogenesis  cell differentiation  
Ontology : EGO-EBIcytoplasm  male meiosis  spermatogenesis  cell differentiation  
NDEx NetworkTEX40
Atlas of Cancer Signalling NetworkTEX40
Wikipedia pathwaysTEX40
Orthology - Evolution
OrthoDB25858
Phylogenetic Trees/Animal Genes : TreeFamTEX40
HOVERGENQ9NTU4
HOGENOMQ9NTU4
Homologs : HomoloGeneTEX40
Homology/Alignments : Family Browser (UCSC)TEX40
Gene fusions - Rearrangements
Fusion : MitelmanESRRA/TEX40 [11q13.1/11q13.1]  [t(11;11)(q13;q13)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX40 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX40
dbVarTEX40
ClinVarTEX40
1000_GenomesTEX40 
Exome Variant ServerTEX40
ExAC (Exome Aggregation Consortium)TEX40 (select the gene name)
Genetic variants : HAPMAP25858
Genomic Variants (DGV)TEX40 [DGVbeta]
DECIPHER (Syndromes)11:64067863-64072239  
CONAN: Copy Number AnalysisTEX40 
Mutations
ICGC Data PortalTEX40 
TCGA Data PortalTEX40 
Broad Tumor PortalTEX40
OASIS PortalTEX40 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTEX40
BioMutasearch TEX40
DgiDB (Drug Gene Interaction Database)TEX40
DoCM (Curated mutations)TEX40 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEX40 (select a term)
intoGenTEX40
Cancer3DTEX40(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTEX40
Genetic Testing Registry TEX40
NextProtQ9NTU4 [Medical]
TSGene25858
GENETestsTEX40
Huge Navigator TEX40 [HugePedia]
snp3D : Map Gene to Disease25858
BioCentury BCIQTEX40
ClinGenTEX40
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25858
Chemical/Pharm GKB GenePA164716726
Clinical trialTEX40
Miscellaneous
canSAR (ICR)TEX40 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEX40
EVEXTEX40
GoPubMedTEX40
iHOPTEX40
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:22:14 CEST 2017

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