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TEX43 (testis expressed 43)

Identity

Alias_namesC5orf48
chromosome 5 open reading frame 48
Alias_symbol (synonym)MGC163367
MGC163369
FLJ27505
Tseg7
Other alias
HGNC (Hugo) TEX43
LocusID (NCBI) 389320
Atlas_Id 74647
Location 5q23.2  [Link to chromosome band 5q23]
Location_base_pair Starts at 126631722 and ends at 126636282 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TEX43   33767
Cards
Entrez_Gene (NCBI)TEX43  389320  testis expressed 43
AliasesC5orf48; Tseg7
GeneCards (Weizmann)TEX43
Ensembl hg19 (Hinxton)ENSG00000196900 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196900 [Gene_View]  chr5:126631722-126636282 [Contig_View]  TEX43 [Vega]
ICGC DataPortalENSG00000196900
TCGA cBioPortalTEX43
AceView (NCBI)TEX43
Genatlas (Paris)TEX43
WikiGenes389320
SOURCE (Princeton)TEX43
Genetics Home Reference (NIH)TEX43
Genomic and cartography
GoldenPath hg38 (UCSC)TEX43  -     chr5:126631722-126636282 +  5q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX43  -     5q23.2   [Description]    (hg19-Feb_2009)
EnsemblTEX43 - 5q23.2 [CytoView hg19]  TEX43 - 5q23.2 [CytoView hg38]
Mapping of homologs : NCBITEX43 [Mapview hg19]  TEX43 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK131015 BC130495 BC130497 HQ258080
RefSeq transcript (Entrez)NM_207408
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TEX43
Cluster EST : UnigeneHs.177983 [ NCBI ]
CGAP (NCI)Hs.177983
Alternative Splicing GalleryENSG00000196900
Gene ExpressionTEX43 [ NCBI-GEO ]   TEX43 [ EBI - ARRAY_EXPRESS ]   TEX43 [ SEEK ]   TEX43 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX43 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389320
GTEX Portal (Tissue expression)TEX43
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZNM6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZNM6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZNM6
Splice isoforms : SwissVarQ6ZNM6
PhosPhoSitePlusQ6ZNM6
Domains : Interpro (EBI)DUF4513   
Domain families : Pfam (Sanger)DUF4513 (PF14983)   
Domain families : Pfam (NCBI)pfam14983   
Conserved Domain (NCBI)TEX43
DMDM Disease mutations389320
Blocks (Seattle)TEX43
SuperfamilyQ6ZNM6
Human Protein AtlasENSG00000196900
Peptide AtlasQ6ZNM6
HPRD13399
IPIIPI00076126   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZNM6
IntAct (EBI)Q6ZNM6
FunCoupENSG00000196900
BioGRIDTEX43
STRING (EMBL)TEX43
ZODIACTEX43
Ontologies - Pathways
QuickGOQ6ZNM6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTEX43
Atlas of Cancer Signalling NetworkTEX43
Wikipedia pathwaysTEX43
Orthology - Evolution
OrthoDB389320
GeneTree (enSembl)ENSG00000196900
Phylogenetic Trees/Animal Genes : TreeFamTEX43
HOVERGENQ6ZNM6
HOGENOMQ6ZNM6
Homologs : HomoloGeneTEX43
Homology/Alignments : Family Browser (UCSC)TEX43
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX43 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX43
dbVarTEX43
ClinVarTEX43
1000_GenomesTEX43 
Exome Variant ServerTEX43
ExAC (Exome Aggregation Consortium)TEX43 (select the gene name)
Genetic variants : HAPMAP389320
Genomic Variants (DGV)TEX43 [DGVbeta]
DECIPHERTEX43 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX43 
Mutations
ICGC Data PortalTEX43 
TCGA Data PortalTEX43 
Broad Tumor PortalTEX43
OASIS PortalTEX43 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTEX43
BioMutasearch TEX43
DgiDB (Drug Gene Interaction Database)TEX43
DoCM (Curated mutations)TEX43 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEX43 (select a term)
intoGenTEX43
Cancer3DTEX43(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTEX43
Genetic Testing Registry TEX43
NextProtQ6ZNM6 [Medical]
TSGene389320
GENETestsTEX43
Target ValidationTEX43
Huge Navigator TEX43 [HugePedia]
snp3D : Map Gene to Disease389320
BioCentury BCIQTEX43
ClinGenTEX43
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389320
Chemical/Pharm GKB GenePA162380336
Clinical trialTEX43
Miscellaneous
canSAR (ICR)TEX43 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEX43
EVEXTEX43
GoPubMedTEX43
iHOPTEX43
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:45:20 CEST 2017

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