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TEX44 (testis expressed 44)

Identity

Alias (NCBI)C2orf57
HGNC (Hugo) TEX44
LocusID (NCBI) 165100
Atlas_Id 78755
Location 2q37.1  [Link to chromosome band 2q37]
Location_base_pair Starts at 231592864 and ends at 231594276 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TEX44   28563
Cards
Entrez_Gene (NCBI)TEX44    testis expressed 44
AliasesC2orf57
GeneCards (Weizmann)TEX44
Ensembl hg19 (Hinxton)ENSG00000177673 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177673 [Gene_View]  ENSG00000177673 [Sequence]  chr2:231592864-231594276 [Contig_View]  TEX44 [Vega]
ICGC DataPortalENSG00000177673
TCGA cBioPortalTEX44
AceView (NCBI)TEX44
Genatlas (Paris)TEX44
SOURCE (Princeton)TEX44
Genetics Home Reference (NIH)TEX44
Genomic and cartography
GoldenPath hg38 (UCSC)TEX44  -     chr2:231592864-231594276 +  2q37.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX44  -     2q37.1   [Description]    (hg19-Feb_2009)
GoldenPathTEX44 - 2q37.1 [CytoView hg19]  TEX44 - 2q37.1 [CytoView hg38]
ImmunoBaseENSG00000177673
Genome Data Viewer NCBITEX44 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC034405 BC063389
RefSeq transcript (Entrez)NM_152614
Consensus coding sequences : CCDS (NCBI)TEX44
Gene ExpressionTEX44 [ NCBI-GEO ]   TEX44 [ EBI - ARRAY_EXPRESS ]   TEX44 [ SEEK ]   TEX44 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX44 [ Firebrowse - Broad ]
GenevisibleExpression of TEX44 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)165100
GTEX Portal (Tissue expression)TEX44
Human Protein AtlasENSG00000177673-TEX44 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53QW1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53QW1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53QW1
PhosPhoSitePlusQ53QW1
Domains : Interpro (EBI)DUF4678   
Domain families : Pfam (Sanger)DUF4678 (PF15727)   
Domain families : Pfam (NCBI)pfam15727   
Conserved Domain (NCBI)TEX44
SuperfamilyQ53QW1
AlphaFold pdb e-kbQ53QW1   
Human Protein Atlas [tissue]ENSG00000177673-TEX44 [tissue]
HPRD14602
Protein Interaction databases
DIP (DOE-UCLA)Q53QW1
IntAct (EBI)Q53QW1
BioGRIDTEX44
STRING (EMBL)TEX44
ZODIACTEX44
Ontologies - Pathways
QuickGOQ53QW1
Ontology : AmiGOprotein binding  cytoplasm  
Ontology : EGO-EBIprotein binding  cytoplasm  
NDEx NetworkTEX44
Atlas of Cancer Signalling NetworkTEX44
Wikipedia pathwaysTEX44
Orthology - Evolution
OrthoDB165100
GeneTree (enSembl)ENSG00000177673
Phylogenetic Trees/Animal Genes : TreeFamTEX44
Homologs : HomoloGeneTEX44
Homology/Alignments : Family Browser (UCSC)TEX44
Gene fusions - Rearrangements
Fusion : QuiverTEX44
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX44 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX44
dbVarTEX44
ClinVarTEX44
MonarchTEX44
1000_GenomesTEX44 
Exome Variant ServerTEX44
GNOMAD BrowserENSG00000177673
Varsome BrowserTEX44
ACMGTEX44 variants
VarityQ53QW1
Genomic Variants (DGV)TEX44 [DGVbeta]
DECIPHERTEX44 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX44 
Mutations
ICGC Data PortalTEX44 
TCGA Data PortalTEX44 
Broad Tumor PortalTEX44
OASIS PortalTEX44 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEX44  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTEX44
Mutations and Diseases : HGMDTEX44
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTEX44
DgiDB (Drug Gene Interaction Database)TEX44
DoCM (Curated mutations)TEX44
CIViC (Clinical Interpretations of Variants in Cancer)TEX44
Cancer3DTEX44
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTEX44
MedgenTEX44
Genetic Testing Registry TEX44
NextProtQ53QW1 [Medical]
GENETestsTEX44
Target ValidationTEX44
Huge Navigator TEX44 [HugePedia]
ClinGenTEX44
Clinical trials, drugs, therapy
MyCancerGenomeTEX44
Protein Interactions : CTDTEX44
Pharm GKB GenePA162379291
PharosQ53QW1
Clinical trialTEX44
Miscellaneous
canSAR (ICR)TEX44
HarmonizomeTEX44
DataMed IndexTEX44
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTEX44
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:25:19 CEST 2021

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