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TEX44 (testis expressed 44)

Identity

Other aliasC2orf57
HGNC (Hugo) TEX44
LocusID (NCBI) 165100
Atlas_Id 78755
Location 2q37.1  [Link to chromosome band 2q37]
Location_base_pair Starts at 231592864 and ends at 231594283 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TEX44   28563
Cards
Entrez_Gene (NCBI)TEX44  165100  testis expressed 44
AliasesC2orf57
GeneCards (Weizmann)TEX44
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:231592864-231594283 [Contig_View]  TEX44 [Vega]
TCGA cBioPortalTEX44
AceView (NCBI)TEX44
Genatlas (Paris)TEX44
WikiGenes165100
SOURCE (Princeton)TEX44
Genetics Home Reference (NIH)TEX44
Genomic and cartography
GoldenPath hg38 (UCSC)TEX44  -     chr2:231592864-231594283 +  2q37.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX44  -     2q37.1   [Description]    (hg19-Feb_2009)
EnsemblTEX44 - 2q37.1 [CytoView hg19]  TEX44 - 2q37.1 [CytoView hg38]
Mapping of homologs : NCBITEX44 [Mapview hg19]  TEX44 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC034405 BC063389 DQ891288 DQ894472
RefSeq transcript (Entrez)NM_152614
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TEX44
Cluster EST : UnigeneHs.98104 [ NCBI ]
CGAP (NCI)Hs.98104
Gene ExpressionTEX44 [ NCBI-GEO ]   TEX44 [ EBI - ARRAY_EXPRESS ]   TEX44 [ SEEK ]   TEX44 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX44 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)165100
GTEX Portal (Tissue expression)TEX44
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53QW1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53QW1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53QW1
Splice isoforms : SwissVarQ53QW1
PhosPhoSitePlusQ53QW1
Domains : Interpro (EBI)DUF4678   
Domain families : Pfam (Sanger)DUF4678 (PF15727)   
Domain families : Pfam (NCBI)pfam15727   
Conserved Domain (NCBI)TEX44
DMDM Disease mutations165100
Blocks (Seattle)TEX44
SuperfamilyQ53QW1
Peptide AtlasQ53QW1
HPRD14602
IPIIPI00166692   
Protein Interaction databases
DIP (DOE-UCLA)Q53QW1
IntAct (EBI)Q53QW1
BioGRIDTEX44
STRING (EMBL)TEX44
ZODIACTEX44
Ontologies - Pathways
QuickGOQ53QW1
Ontology : AmiGOprotein binding  cytoplasm  
Ontology : EGO-EBIprotein binding  cytoplasm  
NDEx NetworkTEX44
Atlas of Cancer Signalling NetworkTEX44
Wikipedia pathwaysTEX44
Orthology - Evolution
OrthoDB165100
Phylogenetic Trees/Animal Genes : TreeFamTEX44
HOVERGENQ53QW1
HOGENOMQ53QW1
Homologs : HomoloGeneTEX44
Homology/Alignments : Family Browser (UCSC)TEX44
Gene fusions - Rearrangements
Fusion: Tumor Portal TEX44
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX44 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX44
dbVarTEX44
ClinVarTEX44
1000_GenomesTEX44 
Exome Variant ServerTEX44
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP165100
Genomic Variants (DGV)TEX44 [DGVbeta]
DECIPHERTEX44 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX44 
Mutations
ICGC Data PortalTEX44 
TCGA Data PortalTEX44 
Broad Tumor PortalTEX44
OASIS PortalTEX44 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTEX44
BioMutasearch TEX44
DgiDB (Drug Gene Interaction Database)TEX44
DoCM (Curated mutations)TEX44 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEX44 (select a term)
intoGenTEX44
Cancer3DTEX44(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTEX44
Genetic Testing Registry TEX44
NextProtQ53QW1 [Medical]
TSGene165100
GENETestsTEX44
Target ValidationTEX44
Huge Navigator TEX44 [HugePedia]
snp3D : Map Gene to Disease165100
BioCentury BCIQTEX44
ClinGenTEX44
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD165100
Chemical/Pharm GKB GenePA162379291
Clinical trialTEX44
Miscellaneous
canSAR (ICR)TEX44 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEX44
EVEXTEX44
GoPubMedTEX44
iHOPTEX44
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:32:12 CET 2017

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