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TEX45 (testis expressed 45)

Identity

Alias_namesC19orf45
chromosome 19 open reading frame 45
Alias_symbol (synonym)FLJ35784
Other alias
HGNC (Hugo) TEX45
LocusID (NCBI) 374877
Atlas_Id 80168
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 7497559 and ends at 7508450 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TEX45   24745
Cards
Entrez_Gene (NCBI)TEX45  374877  testis expressed 45
AliasesC19orf45
GeneCards (Weizmann)TEX45
Ensembl hg19 (Hinxton)ENSG00000198723 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198723 [Gene_View]  chr19:7497559-7508450 [Contig_View]  TEX45 [Vega]
ICGC DataPortalENSG00000198723
TCGA cBioPortalTEX45
AceView (NCBI)TEX45
Genatlas (Paris)TEX45
WikiGenes374877
SOURCE (Princeton)TEX45
Genetics Home Reference (NIH)TEX45
Genomic and cartography
GoldenPath hg38 (UCSC)TEX45  -     chr19:7497559-7508450 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX45  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblTEX45 - 19p13.2 [CytoView hg19]  TEX45 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBITEX45 [Mapview hg19]  TEX45 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093103 AK301623 BC029824 BC034779 DB037908
RefSeq transcript (Entrez)NM_198534
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TEX45
Cluster EST : UnigeneHs.631862 [ NCBI ]
CGAP (NCI)Hs.631862
Alternative Splicing GalleryENSG00000198723
Gene ExpressionTEX45 [ NCBI-GEO ]   TEX45 [ EBI - ARRAY_EXPRESS ]   TEX45 [ SEEK ]   TEX45 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX45 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374877
GTEX Portal (Tissue expression)TEX45
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NA69   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NA69  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NA69
Splice isoforms : SwissVarQ8NA69
PhosPhoSitePlusQ8NA69
Domains : Interpro (EBI)DUF4601   
Domain families : Pfam (Sanger)DUF4601 (PF15373)   
Domain families : Pfam (NCBI)pfam15373   
Conserved Domain (NCBI)TEX45
DMDM Disease mutations374877
Blocks (Seattle)TEX45
SuperfamilyQ8NA69
Human Protein AtlasENSG00000198723
Peptide AtlasQ8NA69
IPIIPI00373926   IPI00908848   IPI00927409   IPI00926734   IPI00926938   
Protein Interaction databases
DIP (DOE-UCLA)Q8NA69
IntAct (EBI)Q8NA69
FunCoupENSG00000198723
BioGRIDTEX45
STRING (EMBL)TEX45
ZODIACTEX45
Ontologies - Pathways
QuickGOQ8NA69
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTEX45
Atlas of Cancer Signalling NetworkTEX45
Wikipedia pathwaysTEX45
Orthology - Evolution
OrthoDB374877
GeneTree (enSembl)ENSG00000198723
Phylogenetic Trees/Animal Genes : TreeFamTEX45
HOVERGENQ8NA69
HOGENOMQ8NA69
Homologs : HomoloGeneTEX45
Homology/Alignments : Family Browser (UCSC)TEX45
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX45 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX45
dbVarTEX45
ClinVarTEX45
1000_GenomesTEX45 
Exome Variant ServerTEX45
ExAC (Exome Aggregation Consortium)TEX45 (select the gene name)
Genetic variants : HAPMAP374877
Genomic Variants (DGV)TEX45 [DGVbeta]
DECIPHERTEX45 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX45 
Mutations
ICGC Data PortalTEX45 
TCGA Data PortalTEX45 
Broad Tumor PortalTEX45
OASIS PortalTEX45 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTEX45
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TEX45
DgiDB (Drug Gene Interaction Database)TEX45
DoCM (Curated mutations)TEX45 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEX45 (select a term)
intoGenTEX45
Cancer3DTEX45(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTEX45
Genetic Testing Registry TEX45
NextProtQ8NA69 [Medical]
TSGene374877
GENETestsTEX45
Target ValidationTEX45
Huge Navigator TEX45 [HugePedia]
snp3D : Map Gene to Disease374877
BioCentury BCIQTEX45
ClinGenTEX45
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374877
Chemical/Pharm GKB GenePA145149520
Clinical trialTEX45
Miscellaneous
canSAR (ICR)TEX45 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEX45
EVEXTEX45
GoPubMedTEX45
iHOPTEX45
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:19 CEST 2017

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