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TEX45 (testis expressed 45)

Identity

Alias (NCBI)C19orf45
HGNC (Hugo) TEX45
HGNC Alias symbFLJ35784
HGNC Previous nameC19orf45
HGNC Previous namechromosome 19 open reading frame 45
LocusID (NCBI) 374877
Atlas_Id 80168
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 7497548 and ends at 7508450 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TEX45   24745
Cards
Entrez_Gene (NCBI)TEX45    testis expressed 45
AliasesC19orf45
GeneCards (Weizmann)TEX45
Ensembl hg19 (Hinxton)ENSG00000198723 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198723 [Gene_View]  ENSG00000198723 [Sequence]  chr19:7497548-7508450 [Contig_View]  TEX45 [Vega]
ICGC DataPortalENSG00000198723
TCGA cBioPortalTEX45
AceView (NCBI)TEX45
Genatlas (Paris)TEX45
SOURCE (Princeton)TEX45
Genetics Home Reference (NIH)TEX45
Genomic and cartography
GoldenPath hg38 (UCSC)TEX45  -     chr19:7497548-7508450 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX45  -     19p13.2   [Description]    (hg19-Feb_2009)
GoldenPathTEX45 - 19p13.2 [CytoView hg19]  TEX45 - 19p13.2 [CytoView hg38]
ImmunoBaseENSG00000198723
Genome Data Viewer NCBITEX45 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK093103 AK301623 BC029824 BC034779 DB037908
RefSeq transcript (Entrez)NM_198534
Consensus coding sequences : CCDS (NCBI)TEX45
Gene ExpressionTEX45 [ NCBI-GEO ]   TEX45 [ EBI - ARRAY_EXPRESS ]   TEX45 [ SEEK ]   TEX45 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX45 [ Firebrowse - Broad ]
GenevisibleExpression of TEX45 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374877
GTEX Portal (Tissue expression)TEX45
Human Protein AtlasENSG00000198723-TEX45 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NA69   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NA69  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NA69
PhosPhoSitePlusQ8NA69
Domains : Interpro (EBI)DUF4601   
Domain families : Pfam (Sanger)DUF4601 (PF15373)   
Domain families : Pfam (NCBI)pfam15373   
Conserved Domain (NCBI)TEX45
SuperfamilyQ8NA69
AlphaFold pdb e-kbQ8NA69   
Human Protein Atlas [tissue]ENSG00000198723-TEX45 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q8NA69
IntAct (EBI)Q8NA69
BioGRIDTEX45
STRING (EMBL)TEX45
ZODIACTEX45
Ontologies - Pathways
QuickGOQ8NA69
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkTEX45
Atlas of Cancer Signalling NetworkTEX45
Wikipedia pathwaysTEX45
Orthology - Evolution
OrthoDB374877
GeneTree (enSembl)ENSG00000198723
Phylogenetic Trees/Animal Genes : TreeFamTEX45
Homologs : HomoloGeneTEX45
Homology/Alignments : Family Browser (UCSC)TEX45
Gene fusions - Rearrangements
Fusion : QuiverTEX45
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX45 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX45
dbVarTEX45
ClinVarTEX45
MonarchTEX45
1000_GenomesTEX45 
Exome Variant ServerTEX45
GNOMAD BrowserENSG00000198723
Varsome BrowserTEX45
ACMGTEX45 variants
VarityQ8NA69
Genomic Variants (DGV)TEX45 [DGVbeta]
DECIPHERTEX45 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX45 
Mutations
ICGC Data PortalTEX45 
TCGA Data PortalTEX45 
Broad Tumor PortalTEX45
OASIS PortalTEX45 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEX45  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTEX45
Mutations and Diseases : HGMDTEX45
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTEX45
DgiDB (Drug Gene Interaction Database)TEX45
DoCM (Curated mutations)TEX45
CIViC (Clinical Interpretations of Variants in Cancer)TEX45
Cancer3DTEX45
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTEX45
MedgenTEX45
Genetic Testing Registry TEX45
NextProtQ8NA69 [Medical]
GENETestsTEX45
Target ValidationTEX45
Huge Navigator TEX45 [HugePedia]
ClinGenTEX45
Clinical trials, drugs, therapy
MyCancerGenomeTEX45
Protein Interactions : CTDTEX45
Pharm GKB GenePA145149520
PharosQ8NA69
Clinical trialTEX45
Miscellaneous
canSAR (ICR)TEX45
HarmonizomeTEX45
DataMed IndexTEX45
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTEX45
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:20 CEST 2021

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