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TEX47 (testis expressed 47)

Identity

Alias_namesC7orf62
chromosome 7 open reading frame 62
Alias_symbol (synonym)MGC26647
Other alias
HGNC (Hugo) TEX47
LocusID (NCBI) 219557
Atlas_Id 79529
Location 7q21.13  [Link to chromosome band 7q21]
Location_base_pair Starts at 88794106 and ends at 88795717 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TEX47   22402
Cards
Entrez_Gene (NCBI)TEX47  219557  testis expressed 47
AliasesC7orf62
GeneCards (Weizmann)TEX47
Ensembl hg19 (Hinxton)ENSG00000164645 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164645 [Gene_View]  chr7:88794106-88795717 [Contig_View]  TEX47 [Vega]
ICGC DataPortalENSG00000164645
TCGA cBioPortalTEX47
AceView (NCBI)TEX47
Genatlas (Paris)TEX47
WikiGenes219557
SOURCE (Princeton)TEX47
Genetics Home Reference (NIH)TEX47
Genomic and cartography
GoldenPath hg38 (UCSC)TEX47  -     chr7:88794106-88795717 -  7q21.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX47  -     7q21.13   [Description]    (hg19-Feb_2009)
EnsemblTEX47 - 7q21.13 [CytoView hg19]  TEX47 - 7q21.13 [CytoView hg38]
Mapping of homologs : NCBITEX47 [Mapview hg19]  TEX47 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC028365 HQ447090
RefSeq transcript (Entrez)NM_152706
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TEX47
Cluster EST : UnigeneHs.112877 [ NCBI ]
CGAP (NCI)Hs.112877
Alternative Splicing GalleryENSG00000164645
Gene ExpressionTEX47 [ NCBI-GEO ]   TEX47 [ EBI - ARRAY_EXPRESS ]   TEX47 [ SEEK ]   TEX47 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX47 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219557
GTEX Portal (Tissue expression)TEX47
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBZ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBZ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBZ9
Splice isoforms : SwissVarQ8TBZ9
PhosPhoSitePlusQ8TBZ9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TEX47
DMDM Disease mutations219557
Blocks (Seattle)TEX47
SuperfamilyQ8TBZ9
Human Protein AtlasENSG00000164645
Peptide AtlasQ8TBZ9
IPIIPI00152328   
Protein Interaction databases
DIP (DOE-UCLA)Q8TBZ9
IntAct (EBI)Q8TBZ9
FunCoupENSG00000164645
BioGRIDTEX47
STRING (EMBL)TEX47
ZODIACTEX47
Ontologies - Pathways
QuickGOQ8TBZ9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTEX47
Atlas of Cancer Signalling NetworkTEX47
Wikipedia pathwaysTEX47
Orthology - Evolution
OrthoDB219557
GeneTree (enSembl)ENSG00000164645
Phylogenetic Trees/Animal Genes : TreeFamTEX47
HOVERGENQ8TBZ9
HOGENOMQ8TBZ9
Homologs : HomoloGeneTEX47
Homology/Alignments : Family Browser (UCSC)TEX47
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX47 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX47
dbVarTEX47
ClinVarTEX47
1000_GenomesTEX47 
Exome Variant ServerTEX47
ExAC (Exome Aggregation Consortium)TEX47 (select the gene name)
Genetic variants : HAPMAP219557
Genomic Variants (DGV)TEX47 [DGVbeta]
DECIPHERTEX47 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX47 
Mutations
ICGC Data PortalTEX47 
TCGA Data PortalTEX47 
Broad Tumor PortalTEX47
OASIS PortalTEX47 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTEX47
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TEX47
DgiDB (Drug Gene Interaction Database)TEX47
DoCM (Curated mutations)TEX47 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEX47 (select a term)
intoGenTEX47
Cancer3DTEX47(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTEX47
Genetic Testing Registry TEX47
NextProtQ8TBZ9 [Medical]
TSGene219557
GENETestsTEX47
Target ValidationTEX47
Huge Navigator TEX47 [HugePedia]
snp3D : Map Gene to Disease219557
BioCentury BCIQTEX47
ClinGenTEX47
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219557
Chemical/Pharm GKB GenePA162380726
Clinical trialTEX47
Miscellaneous
canSAR (ICR)TEX47 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEX47
EVEXTEX47
GoPubMedTEX47
iHOPTEX47
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:19 CEST 2017

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