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TEX47 (testis expressed 47)

Identity

Alias (NCBI)C7orf62
HGNC (Hugo) TEX47
HGNC Alias symbMGC26647
HGNC Previous nameC7orf62
HGNC Previous namechromosome 7 open reading frame 62
LocusID (NCBI) 219557
Atlas_Id 79529
Location 7q21.13  [Link to chromosome band 7q21]
Location_base_pair Starts at 88794106 and ends at 88795737 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TEX47   22402
Cards
Entrez_Gene (NCBI)TEX47    testis expressed 47
AliasesC7orf62
GeneCards (Weizmann)TEX47
Ensembl hg19 (Hinxton)ENSG00000164645 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164645 [Gene_View]  ENSG00000164645 [Sequence]  chr7:88794106-88795737 [Contig_View]  TEX47 [Vega]
ICGC DataPortalENSG00000164645
TCGA cBioPortalTEX47
AceView (NCBI)TEX47
Genatlas (Paris)TEX47
SOURCE (Princeton)TEX47
Genetics Home Reference (NIH)TEX47
Genomic and cartography
GoldenPath hg38 (UCSC)TEX47  -     chr7:88794106-88795737 -  7q21.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX47  -     7q21.13   [Description]    (hg19-Feb_2009)
GoldenPathTEX47 - 7q21.13 [CytoView hg19]  TEX47 - 7q21.13 [CytoView hg38]
ImmunoBaseENSG00000164645
Genome Data Viewer NCBITEX47 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC028365
RefSeq transcript (Entrez)NM_152706
Consensus coding sequences : CCDS (NCBI)TEX47
Gene ExpressionTEX47 [ NCBI-GEO ]   TEX47 [ EBI - ARRAY_EXPRESS ]   TEX47 [ SEEK ]   TEX47 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX47 [ Firebrowse - Broad ]
GenevisibleExpression of TEX47 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219557
GTEX Portal (Tissue expression)TEX47
Human Protein AtlasENSG00000164645-TEX47 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBZ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBZ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBZ9
PhosPhoSitePlusQ8TBZ9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TEX47
SuperfamilyQ8TBZ9
AlphaFold pdb e-kbQ8TBZ9   
Human Protein Atlas [tissue]ENSG00000164645-TEX47 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q8TBZ9
IntAct (EBI)Q8TBZ9
BioGRIDTEX47
STRING (EMBL)TEX47
ZODIACTEX47
Ontologies - Pathways
QuickGOQ8TBZ9
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkTEX47
Atlas of Cancer Signalling NetworkTEX47
Wikipedia pathwaysTEX47
Orthology - Evolution
OrthoDB219557
GeneTree (enSembl)ENSG00000164645
Phylogenetic Trees/Animal Genes : TreeFamTEX47
Homologs : HomoloGeneTEX47
Homology/Alignments : Family Browser (UCSC)TEX47
Gene fusions - Rearrangements
Fusion : QuiverTEX47
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX47 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX47
dbVarTEX47
ClinVarTEX47
MonarchTEX47
1000_GenomesTEX47 
Exome Variant ServerTEX47
GNOMAD BrowserENSG00000164645
Varsome BrowserTEX47
ACMGTEX47 variants
VarityQ8TBZ9
Genomic Variants (DGV)TEX47 [DGVbeta]
DECIPHERTEX47 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX47 
Mutations
ICGC Data PortalTEX47 
TCGA Data PortalTEX47 
Broad Tumor PortalTEX47
OASIS PortalTEX47 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEX47  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTEX47
Mutations and Diseases : HGMDTEX47
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTEX47
DgiDB (Drug Gene Interaction Database)TEX47
DoCM (Curated mutations)TEX47
CIViC (Clinical Interpretations of Variants in Cancer)TEX47
Cancer3DTEX47
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTEX47
MedgenTEX47
Genetic Testing Registry TEX47
NextProtQ8TBZ9 [Medical]
GENETestsTEX47
Target ValidationTEX47
Huge Navigator TEX47 [HugePedia]
ClinGenTEX47
Clinical trials, drugs, therapy
MyCancerGenomeTEX47
Protein Interactions : CTDTEX47
Pharm GKB GenePA162380726
PharosQ8TBZ9
Clinical trialTEX47
Miscellaneous
canSAR (ICR)TEX47
HarmonizomeTEX47
DataMed IndexTEX47
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTEX47
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:20 CEST 2021

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