Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TEX49 (testis expressed 49)

Identity

Alias_namesLINC00935
long intergenic non-protein coding RNA 935
Other alias
HGNC (Hugo) TEX49
LocusID (NCBI) 255411
Atlas_Id 78936
Location 12q13.12  [Link to chromosome band 12q13]
Location_base_pair Starts at 48727435 and ends at 48765788 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TEX49   48628
Cards
Entrez_Gene (NCBI)TEX49  255411  testis expressed 49
AliasesLINC00935
GeneCards (Weizmann)TEX49
Ensembl hg19 (Hinxton)ENSG00000257987 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000257987 [Gene_View]  chr12:48727435-48765788 [Contig_View]  TEX49 [Vega]
ICGC DataPortalENSG00000257987
TCGA cBioPortalTEX49
AceView (NCBI)TEX49
Genatlas (Paris)TEX49
WikiGenes255411
SOURCE (Princeton)TEX49
Genetics Home Reference (NIH)TEX49
Genomic and cartography
GoldenPath hg38 (UCSC)TEX49  -     chr12:48727435-48765788 +  12q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX49  -     12q13.12   [Description]    (hg19-Feb_2009)
EnsemblTEX49 - 12q13.12 [CytoView hg19]  TEX49 - 12q13.12 [CytoView hg38]
Mapping of homologs : NCBITEX49 [Mapview hg19]  TEX49 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK131005 BC036043 BC054859 BC146870 BC146877
RefSeq transcript (Entrez)NM_001351123 NM_001351125
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TEX49
Cluster EST : UnigeneHs.404103 [ NCBI ]
CGAP (NCI)Hs.404103
Alternative Splicing GalleryENSG00000257987
Gene ExpressionTEX49 [ NCBI-GEO ]   TEX49 [ EBI - ARRAY_EXPRESS ]   TEX49 [ SEEK ]   TEX49 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX49 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)255411
GTEX Portal (Tissue expression)TEX49
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TEX49
DMDM Disease mutations255411
Blocks (Seattle)TEX49
Human Protein AtlasENSG00000257987
IPIIPI01022051   IPI00157969   
Protein Interaction databases
FunCoupENSG00000257987
BioGRIDTEX49
STRING (EMBL)TEX49
ZODIACTEX49
Ontologies - Pathways
Huge Navigator TEX49 [HugePedia]
snp3D : Map Gene to Disease255411
BioCentury BCIQTEX49
ClinGenTEX49
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD255411
Clinical trialTEX49
Miscellaneous
canSAR (ICR)TEX49 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEX49
EVEXTEX49
GoPubMedTEX49
iHOPTEX49
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:41:19 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.