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TEX55 (testis expressed 55)

Identity

Alias (NCBI)C3orf30
TSCPA
HGNC (Hugo) TEX55
HGNC Alias symbFLJ32859
LocusID (NCBI) 152405
Atlas_Id 61180
Location 3q13.32  [Link to chromosome band 3q13]
Location_base_pair Starts at 119146165 and ends at 119151456 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

 

Nomenclature
HGNC (Hugo)TEX55   26553
Cards
Entrez_Gene (NCBI)TEX55    testis expressed 55
AliasesC3orf30; TSCPA
GeneCards (Weizmann)TEX55
Ensembl hg19 (Hinxton)ENSG00000163424 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163424 [Gene_View]  ENSG00000163424 [Sequence]  chr3:119146165-119151456 [Contig_View]  TEX55 [Vega]
ICGC DataPortalENSG00000163424
TCGA cBioPortalTEX55
AceView (NCBI)TEX55
Genatlas (Paris)TEX55
SOURCE (Princeton)TEX55
Genetics Home Reference (NIH)TEX55
Genomic and cartography
GoldenPath hg38 (UCSC)TEX55  -     chr3:119146165-119151456 +  3q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX55  -     3q13.32   [Description]    (hg19-Feb_2009)
GoldenPathTEX55 - 3q13.32 [CytoView hg19]  TEX55 - 3q13.32 [CytoView hg38]
ImmunoBaseENSG00000163424
Genome Data Viewer NCBITEX55 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK057421 BC130475 BC144197 DW009752
RefSeq transcript (Entrez)NM_152539
Consensus coding sequences : CCDS (NCBI)TEX55
Gene ExpressionTEX55 [ NCBI-GEO ]   TEX55 [ EBI - ARRAY_EXPRESS ]   TEX55 [ SEEK ]   TEX55 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX55 [ Firebrowse - Broad ]
GenevisibleExpression of TEX55 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)152405
GTEX Portal (Tissue expression)TEX55
Human Protein AtlasENSG00000163424-TEX55 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96M34   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96M34  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96M34
PhosPhoSitePlusQ96M34
Domains : Interpro (EBI)DUF5582   
Domain families : Pfam (Sanger)DUF5582 (PF17819)   
Domain families : Pfam (NCBI)pfam17819   
Conserved Domain (NCBI)TEX55
SuperfamilyQ96M34
AlphaFold pdb e-kbQ96M34   
Human Protein Atlas [tissue]ENSG00000163424-TEX55 [tissue]
HPRD08146
Protein Interaction databases
DIP (DOE-UCLA)Q96M34
IntAct (EBI)Q96M34
BioGRIDTEX55
STRING (EMBL)TEX55
ZODIACTEX55
Ontologies - Pathways
QuickGOQ96M34
Ontology : AmiGOprotein binding  nucleus  nucleus  
Ontology : EGO-EBIprotein binding  nucleus  nucleus  
NDEx NetworkTEX55
Atlas of Cancer Signalling NetworkTEX55
Wikipedia pathwaysTEX55
Orthology - Evolution
OrthoDB152405
GeneTree (enSembl)ENSG00000163424
Phylogenetic Trees/Animal Genes : TreeFamTEX55
Homologs : HomoloGeneTEX55
Homology/Alignments : Family Browser (UCSC)TEX55
Gene fusions - Rearrangements
Fusion : QuiverTEX55
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX55 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TEX55
dbVarTEX55
ClinVarTEX55
MonarchTEX55
1000_GenomesTEX55 
Exome Variant ServerTEX55
GNOMAD BrowserENSG00000163424
Varsome BrowserTEX55
ACMGTEX55 variants
VarityQ96M34
Genomic Variants (DGV)TEX55 [DGVbeta]
DECIPHERTEX55 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX55 
Mutations
ICGC Data PortalTEX55 
TCGA Data PortalTEX55 
Broad Tumor PortalTEX55
OASIS PortalTEX55 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTEX55
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTEX55
DgiDB (Drug Gene Interaction Database)TEX55
DoCM (Curated mutations)TEX55
CIViC (Clinical Interpretations of Variants in Cancer)TEX55
Cancer3DTEX55
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTEX55
MedgenTEX55
Genetic Testing Registry TEX55
NextProtQ96M34 [Medical]
GENETestsTEX55
Target ValidationTEX55
Huge Navigator TEX55 [HugePedia]
ClinGenTEX55
Clinical trials, drugs, therapy
MyCancerGenomeTEX55
Protein Interactions : CTDTEX55
Pharm GKB GenePA142672391
PharosQ96M34
Clinical trialTEX55
Miscellaneous
canSAR (ICR)TEX55
HarmonizomeTEX55
DataMed IndexTEX55
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTEX55
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:22 CEST 2021

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