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TFAP2A-AS1 (TFAP2A antisense RNA 1)

Identity

Other alias-
HGNC (Hugo) TFAP2A-AS1
LocusID (NCBI) 100130275
Atlas_Id 74650
Location 6p24.3  [Link to chromosome band 6p24]
Location_base_pair Starts at 10412318 and ends at 10416169 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TFAP2A-AS1   40579
Cards
Entrez_Gene (NCBI)TFAP2A-AS1  100130275  TFAP2A antisense RNA 1
Aliases
GeneCards (Weizmann)TFAP2A-AS1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:10412318-10416169 [Contig_View]  TFAP2A-AS1 [Vega]
TCGA cBioPortalTFAP2A-AS1
AceView (NCBI)TFAP2A-AS1
Genatlas (Paris)TFAP2A-AS1
WikiGenes100130275
SOURCE (Princeton)TFAP2A-AS1
Genetics Home Reference (NIH)TFAP2A-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)TFAP2A-AS1  -     chr6:10412318-10416169 +  6p24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TFAP2A-AS1  -     6p24.3   [Description]    (hg19-Feb_2009)
EnsemblTFAP2A-AS1 - 6p24.3 [CytoView hg19]  TFAP2A-AS1 - 6p24.3 [CytoView hg38]
Mapping of homologs : NCBITFAP2A-AS1 [Mapview hg19]  TFAP2A-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI290592 AI368022 AK092393 BC012200 BC037167
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TFAP2A-AS1
Cluster EST : UnigeneHs.661431 [ NCBI ]
CGAP (NCI)Hs.661431
Gene ExpressionTFAP2A-AS1 [ NCBI-GEO ]   TFAP2A-AS1 [ EBI - ARRAY_EXPRESS ]   TFAP2A-AS1 [ SEEK ]   TFAP2A-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)TFAP2A-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100130275
GTEX Portal (Tissue expression)TFAP2A-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TFAP2A-AS1
DMDM Disease mutations100130275
Blocks (Seattle)TFAP2A-AS1
IPIIPI00300721   
Protein Interaction databases
BioGRIDTFAP2A-AS1
STRING (EMBL)TFAP2A-AS1
ZODIACTFAP2A-AS1
Ontologies - Pathways
Huge Navigator TFAP2A-AS1 [HugePedia]
snp3D : Map Gene to Disease100130275
BioCentury BCIQTFAP2A-AS1
ClinGenTFAP2A-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100130275
Clinical trialTFAP2A-AS1
Miscellaneous
canSAR (ICR)TFAP2A-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTFAP2A-AS1
EVEXTFAP2A-AS1
GoPubMedTFAP2A-AS1
iHOPTFAP2A-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:34:40 CEST 2018

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