Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TFAP2D (transcription factor AP-2 delta)

Identity

Alias_namesTFAP2BL1
transcription factor AP-2 beta (activating enhancer-binding protein 2 beta)-like 1
transcription factor AP-2 delta (activating enhancer binding protein 2 delta)
Other alias
HGNC (Hugo) TFAP2D
LocusID (NCBI) 83741
Atlas_Id 56546
Location 6p12.3  [Link to chromosome band 6p12]
Location_base_pair Starts at 50713544 and ends at 50773033 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TFAP2D   15581
Cards
Entrez_Gene (NCBI)TFAP2D  83741  transcription factor AP-2 delta
AliasesTFAP2BL1
GeneCards (Weizmann)TFAP2D
Ensembl hg19 (Hinxton)ENSG00000008197 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000008197 [Gene_View]  ENSG00000008197 [Sequence]  chr6:50713544-50773033 [Contig_View]  TFAP2D [Vega]
ICGC DataPortalENSG00000008197
TCGA cBioPortalTFAP2D
AceView (NCBI)TFAP2D
Genatlas (Paris)TFAP2D
WikiGenes83741
SOURCE (Princeton)TFAP2D
Genetics Home Reference (NIH)TFAP2D
Genomic and cartography
GoldenPath hg38 (UCSC)TFAP2D  -     chr6:50713544-50773033 +  6p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TFAP2D  -     6p12.3   [Description]    (hg19-Feb_2009)
EnsemblTFAP2D - 6p12.3 [CytoView hg19]  TFAP2D - 6p12.3 [CytoView hg38]
Mapping of homologs : NCBITFAP2D [Mapview hg19]  TFAP2D [Mapview hg38]
OMIM610161   
Gene and transcription
Genbank (Entrez)AY028376 BC144200 DT221015
RefSeq transcript (Entrez)NM_172238
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TFAP2D
Cluster EST : UnigeneHs.434107 [ NCBI ]
CGAP (NCI)Hs.434107
Alternative Splicing GalleryENSG00000008197
Gene ExpressionTFAP2D [ NCBI-GEO ]   TFAP2D [ EBI - ARRAY_EXPRESS ]   TFAP2D [ SEEK ]   TFAP2D [ MEM ]
Gene Expression Viewer (FireBrowse)TFAP2D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83741
GTEX Portal (Tissue expression)TFAP2D
Human Protein AtlasENSG00000008197-TFAP2D [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z6R9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z6R9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z6R9
Splice isoforms : SwissVarQ7Z6R9
PhosPhoSitePlusQ7Z6R9
Domains : Interpro (EBI)TF_AP2    TF_AP2_C   
Domain families : Pfam (Sanger)TF_AP-2 (PF03299)   
Domain families : Pfam (NCBI)pfam03299   
Conserved Domain (NCBI)TFAP2D
DMDM Disease mutations83741
Blocks (Seattle)TFAP2D
SuperfamilyQ7Z6R9
Human Protein Atlas [tissue]ENSG00000008197-TFAP2D [tissue]
Peptide AtlasQ7Z6R9
HPRD11627
IPIIPI00217422   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z6R9
IntAct (EBI)Q7Z6R9
FunCoupENSG00000008197
BioGRIDTFAP2D
STRING (EMBL)TFAP2D
ZODIACTFAP2D
Ontologies - Pathways
QuickGOQ7Z6R9
Ontology : AmiGORNA polymerase II regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  nucleus  transcription factor complex  regulation of transcription by RNA polymerase II  negative regulation of neuron apoptotic process  positive regulation of transcription by RNA polymerase II  inferior colliculus development  
Ontology : EGO-EBIRNA polymerase II regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  nucleus  transcription factor complex  regulation of transcription by RNA polymerase II  negative regulation of neuron apoptotic process  positive regulation of transcription by RNA polymerase II  inferior colliculus development  
NDEx NetworkTFAP2D
Atlas of Cancer Signalling NetworkTFAP2D
Wikipedia pathwaysTFAP2D
Orthology - Evolution
OrthoDB83741
GeneTree (enSembl)ENSG00000008197
Phylogenetic Trees/Animal Genes : TreeFamTFAP2D
HOVERGENQ7Z6R9
HOGENOMQ7Z6R9
Homologs : HomoloGeneTFAP2D
Homology/Alignments : Family Browser (UCSC)TFAP2D
Gene fusions - Rearrangements
Fusion : QuiverTFAP2D
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTFAP2D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TFAP2D
dbVarTFAP2D
ClinVarTFAP2D
1000_GenomesTFAP2D 
Exome Variant ServerTFAP2D
ExAC (Exome Aggregation Consortium)ENSG00000008197
GNOMAD BrowserENSG00000008197
Varsome BrowserTFAP2D
Genetic variants : HAPMAP83741
Genomic Variants (DGV)TFAP2D [DGVbeta]
DECIPHERTFAP2D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTFAP2D 
Mutations
ICGC Data PortalTFAP2D 
TCGA Data PortalTFAP2D 
Broad Tumor PortalTFAP2D
OASIS PortalTFAP2D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTFAP2D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTFAP2D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TFAP2D
DgiDB (Drug Gene Interaction Database)TFAP2D
DoCM (Curated mutations)TFAP2D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TFAP2D (select a term)
intoGenTFAP2D
Cancer3DTFAP2D(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610161   
Orphanet
DisGeNETTFAP2D
MedgenTFAP2D
Genetic Testing Registry TFAP2D
NextProtQ7Z6R9 [Medical]
TSGene83741
GENETestsTFAP2D
Target ValidationTFAP2D
Huge Navigator TFAP2D [HugePedia]
snp3D : Map Gene to Disease83741
BioCentury BCIQTFAP2D
ClinGenTFAP2D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83741
Chemical/Pharm GKB GenePA37984
Clinical trialTFAP2D
Miscellaneous
canSAR (ICR)TFAP2D (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTFAP2D
EVEXTFAP2D
GoPubMedTFAP2D
iHOPTFAP2D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:44:40 CET 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.