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TFB1M (transcription factor B1, mitochondrial)

Identity

Alias_symbol (synonym)mtTFB
CGI-75
Other aliasCGI75
mtTFB1
HGNC (Hugo) TFB1M
LocusID (NCBI) 51106
Atlas_Id 74652
Location 6q25.3  [Link to chromosome band 6q25]
Location_base_pair Starts at 155256130 and ends at 155314483 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ESR1 (6q25.1) / TFB1M (6q25.3)TIAM2 (6q25.3) / TFB1M (6q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(6;6)(q25;q25) ESR1/TFB1M


External links

Nomenclature
HGNC (Hugo)TFB1M   17037
Cards
Entrez_Gene (NCBI)TFB1M  51106  transcription factor B1, mitochondrial
AliasesCGI-75; CGI75; mtTFB; mtTFB1
GeneCards (Weizmann)TFB1M
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:155256130-155314483 [Contig_View]  TFB1M [Vega]
TCGA cBioPortalTFB1M
AceView (NCBI)TFB1M
Genatlas (Paris)TFB1M
WikiGenes51106
SOURCE (Princeton)TFB1M
Genetics Home Reference (NIH)TFB1M
Genomic and cartography
GoldenPath hg38 (UCSC)TFB1M  -     chr6:155256130-155314483 -  6q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TFB1M  -     6q25.3   [Description]    (hg19-Feb_2009)
EnsemblTFB1M - 6q25.3 [CytoView hg19]  TFB1M - 6q25.3 [CytoView hg38]
Mapping of homologs : NCBITFB1M [Mapview hg19]  TFB1M [Mapview hg38]
OMIM607033   
Gene and transcription
Genbank (Entrez)AA405744 AF151833 AK022993 AK289484 BC005183
RefSeq transcript (Entrez)NM_001350501 NM_001350502 NM_016020
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TFB1M
Cluster EST : UnigeneHs.655297 [ NCBI ]
CGAP (NCI)Hs.655297
Gene ExpressionTFB1M [ NCBI-GEO ]   TFB1M [ EBI - ARRAY_EXPRESS ]   TFB1M [ SEEK ]   TFB1M [ MEM ]
Gene Expression Viewer (FireBrowse)TFB1M [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51106
GTEX Portal (Tissue expression)TFB1M
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WVM0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WVM0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WVM0
Splice isoforms : SwissVarQ8WVM0
Catalytic activity : Enzyme2.1.1.- [ Enzyme-Expasy ]   2.1.1.-2.1.1.- [ IntEnz-EBI ]   2.1.1.- [ BRENDA ]   2.1.1.- [ KEGG ]   
PhosPhoSitePlusQ8WVM0
Domaine pattern : Prosite (Expaxy)RRNA_A_DIMETH (PS01131)    SAM_RNA_A_N6_MT (PS51689)   
Domains : Interpro (EBI)KsgA/Erm    rRNA_Ade_diMease-like    rRNA_Ade_Mease_Trfase_CS    rRNA_Ade_methylase_Trfase_N    rRNA_adenine_dimethylase    SAM-dependent_MTases   
Domain families : Pfam (Sanger)RrnaAD (PF00398)   
Domain families : Pfam (NCBI)pfam00398   
Domain families : Smart (EMBL)rADc (SM00650)  
Conserved Domain (NCBI)TFB1M
DMDM Disease mutations51106
Blocks (Seattle)TFB1M
SuperfamilyQ8WVM0
Peptide AtlasQ8WVM0
HPRD09515
IPIIPI00291525   
Protein Interaction databases
DIP (DOE-UCLA)Q8WVM0
IntAct (EBI)Q8WVM0
BioGRIDTFB1M
STRING (EMBL)TFB1M
ZODIACTFB1M
Ontologies - Pathways
QuickGOQ8WVM0
Ontology : AmiGO###############################################################################################################################################################################################################################################################                        
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                        
NDEx NetworkTFB1M
Atlas of Cancer Signalling NetworkTFB1M
Wikipedia pathwaysTFB1M
Orthology - Evolution
OrthoDB51106
Phylogenetic Trees/Animal Genes : TreeFamTFB1M
HOVERGENQ8WVM0
HOGENOMQ8WVM0
Homologs : HomoloGeneTFB1M
Homology/Alignments : Family Browser (UCSC)TFB1M
Gene fusions - Rearrangements
Fusion : QuiverTFB1M
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTFB1M [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TFB1M
dbVarTFB1M
ClinVarTFB1M
1000_GenomesTFB1M 
Exome Variant ServerTFB1M
Varsome BrowserTFB1M
Genetic variants : HAPMAP51106
Genomic Variants (DGV)TFB1M [DGVbeta]
DECIPHERTFB1M [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTFB1M 
Mutations
ICGC Data PortalTFB1M 
TCGA Data PortalTFB1M 
Broad Tumor PortalTFB1M
OASIS PortalTFB1M [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTFB1M  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTFB1M
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch TFB1M
DgiDB (Drug Gene Interaction Database)TFB1M
DoCM (Curated mutations)TFB1M (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TFB1M (select a term)
intoGenTFB1M
Cancer3DTFB1M(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607033   
Orphanet12050   
DisGeNETTFB1M
MedgenTFB1M
Genetic Testing Registry TFB1M
NextProtQ8WVM0 [Medical]
TSGene51106
GENETestsTFB1M
Target ValidationTFB1M
Huge Navigator TFB1M [HugePedia]
snp3D : Map Gene to Disease51106
BioCentury BCIQTFB1M
ClinGenTFB1M
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51106
Chemical/Pharm GKB GenePA38198
Clinical trialTFB1M
Miscellaneous
canSAR (ICR)TFB1M (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTFB1M
EVEXTFB1M
GoPubMedTFB1M
iHOPTFB1M
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:34:41 CEST 2018

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