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TFB2M (transcription factor B2, mitochondrial)

Identity

Alias (NCBI)Hkp1
mtTFB2
HGNC (Hugo) TFB2M
HGNC Alias symbFLJ23182
FLJ22661
Hkp1
LocusID (NCBI) 64216
Atlas_Id 54698
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 246540561 and ends at 246566261 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SMYD3 (1q44) / TFB2M (1q44)SMYD3 1q44 / TFB2M 1q44

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TFB2M   18559
Cards
Entrez_Gene (NCBI)TFB2M    transcription factor B2, mitochondrial
AliasesHkp1; mtTFB2
GeneCards (Weizmann)TFB2M
Ensembl hg19 (Hinxton)ENSG00000162851 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162851 [Gene_View]  ENSG00000162851 [Sequence]  chr1:246540561-246566261 [Contig_View]  TFB2M [Vega]
ICGC DataPortalENSG00000162851
TCGA cBioPortalTFB2M
AceView (NCBI)TFB2M
Genatlas (Paris)TFB2M
SOURCE (Princeton)TFB2M
Genetics Home Reference (NIH)TFB2M
Genomic and cartography
GoldenPath hg38 (UCSC)TFB2M  -     chr1:246540561-246566261 -  1q44   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TFB2M  -     1q44   [Description]    (hg19-Feb_2009)
GoldenPathTFB2M - 1q44 [CytoView hg19]  TFB2M - 1q44 [CytoView hg38]
ImmunoBaseENSG00000162851
Genome Data Viewer NCBITFB2M [Mapview hg19]  
OMIM607055   
Gene and transcription
Genbank (Entrez)AF529366 AK026314 AK026835 AK300238 BC003383
RefSeq transcript (Entrez)NM_022366
Consensus coding sequences : CCDS (NCBI)TFB2M
Gene ExpressionTFB2M [ NCBI-GEO ]   TFB2M [ EBI - ARRAY_EXPRESS ]   TFB2M [ SEEK ]   TFB2M [ MEM ]
Gene Expression Viewer (FireBrowse)TFB2M [ Firebrowse - Broad ]
GenevisibleExpression of TFB2M in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64216
GTEX Portal (Tissue expression)TFB2M
Human Protein AtlasENSG00000162851-TFB2M [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H5Q4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H5Q4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H5Q4
PhosPhoSitePlusQ9H5Q4
Domaine pattern : Prosite (Expaxy)SAM_RNA_A_N6_MT (PS51689)   
Domains : Interpro (EBI)KsgA/Erm    rRNA_Ade_methylase_Trfase_N    SAM-dependent_MTases    TFB2M   
Domain families : Pfam (Sanger)RrnaAD (PF00398)   
Domain families : Pfam (NCBI)pfam00398   
Domain families : Smart (EMBL)rADc (SM00650)  
Conserved Domain (NCBI)TFB2M
PDB (RSDB)6ERO    6ERP    6ERQ   
PDB Europe6ERO    6ERP    6ERQ   
PDB (PDBSum)6ERO    6ERP    6ERQ   
PDB (IMB)6ERO    6ERP    6ERQ   
Structural Biology KnowledgeBase6ERO    6ERP    6ERQ   
SCOP (Structural Classification of Proteins)6ERO    6ERP    6ERQ   
CATH (Classification of proteins structures)6ERO    6ERP    6ERQ   
SuperfamilyQ9H5Q4
AlphaFold pdb e-kbQ9H5Q4   
Human Protein Atlas [tissue]ENSG00000162851-TFB2M [tissue]
HPRD09520
Protein Interaction databases
DIP (DOE-UCLA)Q9H5Q4
IntAct (EBI)Q9H5Q4
BioGRIDTFB2M
STRING (EMBL)TFB2M
ZODIACTFB2M
Ontologies - Pathways
QuickGOQ9H5Q4
Ontology : AmiGOrRNA (adenine-N6,N6-)-dimethyltransferase activity  transcription coregulator activity  RNA binding  mitochondrion  mitochondrial matrix  mitochondrial matrix  mitochondrial matrix  regulation of transcription, DNA-templated  mitochondrial transcription  transcription initiation from mitochondrial promoter  transcription initiation from mitochondrial promoter  transcription initiation from mitochondrial promoter  mitochondrion organization  rRNA methylation  mitochondrial transcription factor activity  mitochondrial transcription factor activity  mitochondrial nucleoid  
Ontology : EGO-EBIrRNA (adenine-N6,N6-)-dimethyltransferase activity  transcription coregulator activity  RNA binding  mitochondrion  mitochondrial matrix  mitochondrial matrix  mitochondrial matrix  regulation of transcription, DNA-templated  mitochondrial transcription  transcription initiation from mitochondrial promoter  transcription initiation from mitochondrial promoter  transcription initiation from mitochondrial promoter  mitochondrion organization  rRNA methylation  mitochondrial transcription factor activity  mitochondrial transcription factor activity  mitochondrial nucleoid  
NDEx NetworkTFB2M
Atlas of Cancer Signalling NetworkTFB2M
Wikipedia pathwaysTFB2M
Orthology - Evolution
OrthoDB64216
GeneTree (enSembl)ENSG00000162851
Phylogenetic Trees/Animal Genes : TreeFamTFB2M
Homologs : HomoloGeneTFB2M
Homology/Alignments : Family Browser (UCSC)TFB2M
Gene fusions - Rearrangements
Fusion : QuiverTFB2M
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTFB2M [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TFB2M
dbVarTFB2M
ClinVarTFB2M
MonarchTFB2M
1000_GenomesTFB2M 
Exome Variant ServerTFB2M
GNOMAD BrowserENSG00000162851
Varsome BrowserTFB2M
ACMGTFB2M variants
VarityQ9H5Q4
Genomic Variants (DGV)TFB2M [DGVbeta]
DECIPHERTFB2M [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTFB2M 
Mutations
ICGC Data PortalTFB2M 
TCGA Data PortalTFB2M 
Broad Tumor PortalTFB2M
OASIS PortalTFB2M [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTFB2M  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTFB2M
Mutations and Diseases : HGMDTFB2M
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTFB2M
DgiDB (Drug Gene Interaction Database)TFB2M
DoCM (Curated mutations)TFB2M
CIViC (Clinical Interpretations of Variants in Cancer)TFB2M
Cancer3DTFB2M
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607055   
Orphanet
DisGeNETTFB2M
MedgenTFB2M
Genetic Testing Registry TFB2M
NextProtQ9H5Q4 [Medical]
GENETestsTFB2M
Target ValidationTFB2M
Huge Navigator TFB2M [HugePedia]
ClinGenTFB2M
Clinical trials, drugs, therapy
MyCancerGenomeTFB2M
Protein Interactions : CTDTFB2M
Pharm GKB GenePA38348
PharosQ9H5Q4
Clinical trialTFB2M
Miscellaneous
canSAR (ICR)TFB2M
HarmonizomeTFB2M
DataMed IndexTFB2M
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTFB2M
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:34:52 CEST 2021

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