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TFCP2 (transcription factor CP2)

Identity

Alias_symbol (synonym)CP2
LSF
LBP-1C
TFCP2C
Other aliasLBP1C
LSF1D
SEF
HGNC (Hugo) TFCP2
LocusID (NCBI) 7024
Atlas_Id 51533
Location 12q13.12  [Link to chromosome band 12q13]
Location_base_pair Starts at 51487539 and ends at 51566926 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TFCP2 (12q13.12) / TFCP2 (12q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TFCP2   11748
Cards
Entrez_Gene (NCBI)TFCP2  7024  transcription factor CP2
AliasesLBP1C; LSF; LSF1D; SEF; 
TFCP2C
GeneCards (Weizmann)TFCP2
Ensembl hg19 (Hinxton)ENSG00000135457 [Gene_View]  chr12:51487539-51566926 [Contig_View]  TFCP2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000135457 [Gene_View]  chr12:51487539-51566926 [Contig_View]  TFCP2 [Vega]
ICGC DataPortalENSG00000135457
TCGA cBioPortalTFCP2
AceView (NCBI)TFCP2
Genatlas (Paris)TFCP2
WikiGenes7024
SOURCE (Princeton)TFCP2
Genetics Home Reference (NIH)TFCP2
Genomic and cartography
GoldenPath hg19 (UCSC)TFCP2  -     chr12:51487539-51566926 -  12q13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TFCP2  -     12q13.12   [Description]    (hg38-Dec_2013)
EnsemblTFCP2 - 12q13.12 [CytoView hg19]  TFCP2 - 12q13.12 [CytoView hg38]
Mapping of homologs : NCBITFCP2 [Mapview hg19]  TFCP2 [Mapview hg38]
OMIM189889   
Gene and transcription
Genbank (Entrez)AK291264 AK308087 AU133131 BC003634 BX479302
RefSeq transcript (Entrez)NM_001173452 NM_001173453 NM_005653
RefSeq genomic (Entrez)NC_000012 NC_018923 NG_029908 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)TFCP2
Cluster EST : UnigeneHs.48849 [ NCBI ]
CGAP (NCI)Hs.48849
Alternative Splicing GalleryENSG00000135457
Gene ExpressionTFCP2 [ NCBI-GEO ]   TFCP2 [ EBI - ARRAY_EXPRESS ]   TFCP2 [ SEEK ]   TFCP2 [ MEM ]
Gene Expression Viewer (FireBrowse)TFCP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7024
GTEX Portal (Tissue expression)TFCP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ12800   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ12800  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ12800
Splice isoforms : SwissVarQ12800
PhosPhoSitePlusQ12800
Domains : Interpro (EBI)CP2    SAM/pointed   
Domain families : Pfam (Sanger)CP2 (PF04516)   
Domain families : Pfam (NCBI)pfam04516   
Conserved Domain (NCBI)TFCP2
DMDM Disease mutations7024
Blocks (Seattle)TFCP2
SuperfamilyQ12800
Human Protein AtlasENSG00000135457
Peptide AtlasQ12800
HPRD01790
IPIIPI00037599   IPI00140998   IPI00953927   IPI00791184   IPI01021785   
Protein Interaction databases
DIP (DOE-UCLA)Q12800
IntAct (EBI)Q12800
FunCoupENSG00000135457
BioGRIDTFCP2
STRING (EMBL)TFCP2
ZODIACTFCP2
Ontologies - Pathways
QuickGOQ12800
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  cellular_component  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  protein C-terminus binding  sequence-specific DNA binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  cellular_component  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  protein C-terminus binding  sequence-specific DNA binding  
NDEx NetworkTFCP2
Atlas of Cancer Signalling NetworkTFCP2
Wikipedia pathwaysTFCP2
Orthology - Evolution
OrthoDB7024
GeneTree (enSembl)ENSG00000135457
Phylogenetic Trees/Animal Genes : TreeFamTFCP2
HOVERGENQ12800
HOGENOMQ12800
Homologs : HomoloGeneTFCP2
Homology/Alignments : Family Browser (UCSC)TFCP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTFCP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TFCP2
dbVarTFCP2
ClinVarTFCP2
1000_GenomesTFCP2 
Exome Variant ServerTFCP2
ExAC (Exome Aggregation Consortium)TFCP2 (select the gene name)
Genetic variants : HAPMAP7024
Genomic Variants (DGV)TFCP2 [DGVbeta]
DECIPHER (Syndromes)12:51487539-51566926  ENSG00000135457
CONAN: Copy Number AnalysisTFCP2 
Mutations
ICGC Data PortalTFCP2 
TCGA Data PortalTFCP2 
Broad Tumor PortalTFCP2
OASIS PortalTFCP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTFCP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTFCP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TFCP2
DgiDB (Drug Gene Interaction Database)TFCP2
DoCM (Curated mutations)TFCP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TFCP2 (select a term)
intoGenTFCP2
Cancer3DTFCP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM189889   
Orphanet
MedgenTFCP2
Genetic Testing Registry TFCP2
NextProtQ12800 [Medical]
TSGene7024
GENETestsTFCP2
Huge Navigator TFCP2 [HugePedia]
snp3D : Map Gene to Disease7024
BioCentury BCIQTFCP2
ClinGenTFCP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7024
Chemical/Pharm GKB GenePA36463
Clinical trialTFCP2
Miscellaneous
canSAR (ICR)TFCP2 (select the gene name)
Probes
Litterature
PubMed59 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTFCP2
EVEXTFCP2
GoPubMedTFCP2
iHOPTFCP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:22:15 CEST 2017

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