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TFCP2L1 (transcription factor CP2 like 1)

Identity

Alias (NCBI)CRTR1
LBP-9
LBP9
HGNC (Hugo) TFCP2L1
HGNC Alias symbLBP-9
CRTR1
HGNC Previous nametranscription factor CP2-like 1
LocusID (NCBI) 29842
Atlas_Id 57862
Location 2q14.2  [Link to chromosome band 2q14]
Location_base_pair Starts at 121216588 and ends at 121285202 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MOK (14q32.31) / TFCP2L1 (2q14.2)TFCP2L1 (2q14.2) / CLASP1 (2q14.2)TFCP2L1 (2q14.2) / SHMT1 (17p11.2)
TFCP2L1 (2q14.2) / TFCP2L1 (2q14.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TFCP2L1   17925
Cards
Entrez_Gene (NCBI)TFCP2L1    transcription factor CP2 like 1
AliasesCRTR1; LBP-9; LBP9
GeneCards (Weizmann)TFCP2L1
Ensembl hg19 (Hinxton)ENSG00000115112 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000115112 [Gene_View]  ENSG00000115112 [Sequence]  chr2:121216588-121285202 [Contig_View]  TFCP2L1 [Vega]
ICGC DataPortalENSG00000115112
TCGA cBioPortalTFCP2L1
AceView (NCBI)TFCP2L1
Genatlas (Paris)TFCP2L1
SOURCE (Princeton)TFCP2L1
Genetics Home Reference (NIH)TFCP2L1
Genomic and cartography
GoldenPath hg38 (UCSC)TFCP2L1  -     chr2:121216588-121285202 -  2q14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TFCP2L1  -     2q14.2   [Description]    (hg19-Feb_2009)
GoldenPathTFCP2L1 - 2q14.2 [CytoView hg19]  TFCP2L1 - 2q14.2 [CytoView hg38]
ImmunoBaseENSG00000115112
Genome Data Viewer NCBITFCP2L1 [Mapview hg19]  
OMIM609785   
Gene and transcription
Genbank (Entrez)AF198488 AK311692 AL137740 BC020554 BC064698
RefSeq transcript (Entrez)NM_014553
Consensus coding sequences : CCDS (NCBI)TFCP2L1
Gene ExpressionTFCP2L1 [ NCBI-GEO ]   TFCP2L1 [ EBI - ARRAY_EXPRESS ]   TFCP2L1 [ SEEK ]   TFCP2L1 [ MEM ]
Gene Expression Viewer (FireBrowse)TFCP2L1 [ Firebrowse - Broad ]
GenevisibleExpression of TFCP2L1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29842
GTEX Portal (Tissue expression)TFCP2L1
Human Protein AtlasENSG00000115112-TFCP2L1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZI6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZI6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZI6
PhosPhoSitePlusQ9NZI6
Domains : Interpro (EBI)CP2    SAM/pointed_sf    SAM_3    TFCP2L1_SAM   
Domain families : Pfam (Sanger)CP2 (PF04516)    SAM_3 (PF18016)   
Domain families : Pfam (NCBI)pfam04516    pfam18016   
Conserved Domain (NCBI)TFCP2L1
SuperfamilyQ9NZI6
AlphaFold pdb e-kbQ9NZI6   
Human Protein Atlas [tissue]ENSG00000115112-TFCP2L1 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q9NZI6
IntAct (EBI)Q9NZI6
BioGRIDTFCP2L1
STRING (EMBL)TFCP2L1
ZODIACTFCP2L1
Ontologies - Pathways
QuickGOQ9NZI6
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  chromatin  cell morphogenesis  RNA polymerase II cis-regulatory region sequence-specific DNA binding  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription activator activity, RNA polymerase II-specific  epithelial cell maturation  nucleus  cytoplasm  regulation of transcription by RNA polymerase II  regulation of transcription by RNA polymerase II  cytoplasm organization  salivary gland development  determination of adult lifespan  membrane  positive regulation of growth  positive regulation of transcription by RNA polymerase II  sequence-specific double-stranded DNA binding  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  chromatin  cell morphogenesis  RNA polymerase II cis-regulatory region sequence-specific DNA binding  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription activator activity, RNA polymerase II-specific  epithelial cell maturation  nucleus  cytoplasm  regulation of transcription by RNA polymerase II  regulation of transcription by RNA polymerase II  cytoplasm organization  salivary gland development  determination of adult lifespan  membrane  positive regulation of growth  positive regulation of transcription by RNA polymerase II  sequence-specific double-stranded DNA binding  
NDEx NetworkTFCP2L1
Atlas of Cancer Signalling NetworkTFCP2L1
Wikipedia pathwaysTFCP2L1
Orthology - Evolution
OrthoDB29842
GeneTree (enSembl)ENSG00000115112
Phylogenetic Trees/Animal Genes : TreeFamTFCP2L1
Homologs : HomoloGeneTFCP2L1
Homology/Alignments : Family Browser (UCSC)TFCP2L1
Gene fusions - Rearrangements
Fusion : QuiverTFCP2L1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTFCP2L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TFCP2L1
dbVarTFCP2L1
ClinVarTFCP2L1
MonarchTFCP2L1
1000_GenomesTFCP2L1 
Exome Variant ServerTFCP2L1
GNOMAD BrowserENSG00000115112
Varsome BrowserTFCP2L1
ACMGTFCP2L1 variants
VarityQ9NZI6
Genomic Variants (DGV)TFCP2L1 [DGVbeta]
DECIPHERTFCP2L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTFCP2L1 
Mutations
ICGC Data PortalTFCP2L1 
TCGA Data PortalTFCP2L1 
Broad Tumor PortalTFCP2L1
OASIS PortalTFCP2L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTFCP2L1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTFCP2L1
Mutations and Diseases : HGMDTFCP2L1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTFCP2L1
DgiDB (Drug Gene Interaction Database)TFCP2L1
DoCM (Curated mutations)TFCP2L1
CIViC (Clinical Interpretations of Variants in Cancer)TFCP2L1
Cancer3DTFCP2L1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609785   
Orphanet
DisGeNETTFCP2L1
MedgenTFCP2L1
Genetic Testing Registry TFCP2L1
NextProtQ9NZI6 [Medical]
GENETestsTFCP2L1
Target ValidationTFCP2L1
Huge Navigator TFCP2L1 [HugePedia]
ClinGenTFCP2L1
Clinical trials, drugs, therapy
MyCancerGenomeTFCP2L1
Protein Interactions : CTDTFCP2L1
Pharm GKB GenePA134980544
PharosQ9NZI6
Clinical trialTFCP2L1
Miscellaneous
canSAR (ICR)TFCP2L1
HarmonizomeTFCP2L1
DataMed IndexTFCP2L1
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTFCP2L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:34:52 CEST 2021

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