Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TFCP2L1 (transcription factor CP2 like 1)

Identity

Alias_namestranscription factor CP2-like 1
Alias_symbol (synonym)LBP-9
CRTR1
Other aliasLBP9
HGNC (Hugo) TFCP2L1
LocusID (NCBI) 29842
Atlas_Id 74653
Location 2q14.2  [Link to chromosome band 2q14]
Location_base_pair Starts at 121216588 and ends at 121285202 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MOK (14q32.31) / TFCP2L1 (2q14.2)TFCP2L1 (2q14.2) / CLASP1 (2q14.2)TFCP2L1 (2q14.2) / SHMT1 (17p11.2)
TFCP2L1 (2q14.2) / TFCP2L1 (2q14.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TFCP2L1   17925
Cards
Entrez_Gene (NCBI)TFCP2L1  29842  transcription factor CP2 like 1
AliasesCRTR1; LBP-9; LBP9
GeneCards (Weizmann)TFCP2L1
Ensembl hg19 (Hinxton)ENSG00000115112 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000115112 [Gene_View]  chr2:121216588-121285202 [Contig_View]  TFCP2L1 [Vega]
ICGC DataPortalENSG00000115112
TCGA cBioPortalTFCP2L1
AceView (NCBI)TFCP2L1
Genatlas (Paris)TFCP2L1
WikiGenes29842
SOURCE (Princeton)TFCP2L1
Genetics Home Reference (NIH)TFCP2L1
Genomic and cartography
GoldenPath hg38 (UCSC)TFCP2L1  -     chr2:121216588-121285202 -  2q14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TFCP2L1  -     2q14.2   [Description]    (hg19-Feb_2009)
EnsemblTFCP2L1 - 2q14.2 [CytoView hg19]  TFCP2L1 - 2q14.2 [CytoView hg38]
Mapping of homologs : NCBITFCP2L1 [Mapview hg19]  TFCP2L1 [Mapview hg38]
OMIM609785   
Gene and transcription
Genbank (Entrez)AF198488 AK311692 AL137740 BC020554 BC064698
RefSeq transcript (Entrez)NM_014553
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TFCP2L1
Cluster EST : UnigeneHs.156471 [ NCBI ]
CGAP (NCI)Hs.156471
Alternative Splicing GalleryENSG00000115112
Gene ExpressionTFCP2L1 [ NCBI-GEO ]   TFCP2L1 [ EBI - ARRAY_EXPRESS ]   TFCP2L1 [ SEEK ]   TFCP2L1 [ MEM ]
Gene Expression Viewer (FireBrowse)TFCP2L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29842
GTEX Portal (Tissue expression)TFCP2L1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZI6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZI6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZI6
Splice isoforms : SwissVarQ9NZI6
PhosPhoSitePlusQ9NZI6
Domains : Interpro (EBI)CP2    SAM/pointed   
Domain families : Pfam (Sanger)CP2 (PF04516)   
Domain families : Pfam (NCBI)pfam04516   
Conserved Domain (NCBI)TFCP2L1
DMDM Disease mutations29842
Blocks (Seattle)TFCP2L1
SuperfamilyQ9NZI6
Human Protein AtlasENSG00000115112
Peptide AtlasQ9NZI6
HPRD18175
IPIIPI00005099   IPI01012965   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZI6
IntAct (EBI)Q9NZI6
FunCoupENSG00000115112
BioGRIDTFCP2L1
STRING (EMBL)TFCP2L1
ZODIACTFCP2L1
Ontologies - Pathways
QuickGOQ9NZI6
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  cell morphogenesis  fibrillar center  epithelial cell maturation  DNA binding  transcription factor activity, sequence-specific DNA binding  transcription corepressor activity  mitochondrion  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  steroid biosynthetic process  cytoplasm organization  salivary gland development  female pregnancy  determination of adult lifespan  membrane  positive regulation of growth  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  cell morphogenesis  fibrillar center  epithelial cell maturation  DNA binding  transcription factor activity, sequence-specific DNA binding  transcription corepressor activity  mitochondrion  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  steroid biosynthetic process  cytoplasm organization  salivary gland development  female pregnancy  determination of adult lifespan  membrane  positive regulation of growth  
NDEx NetworkTFCP2L1
Atlas of Cancer Signalling NetworkTFCP2L1
Wikipedia pathwaysTFCP2L1
Orthology - Evolution
OrthoDB29842
GeneTree (enSembl)ENSG00000115112
Phylogenetic Trees/Animal Genes : TreeFamTFCP2L1
HOVERGENQ9NZI6
HOGENOMQ9NZI6
Homologs : HomoloGeneTFCP2L1
Homology/Alignments : Family Browser (UCSC)TFCP2L1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTFCP2L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TFCP2L1
dbVarTFCP2L1
ClinVarTFCP2L1
1000_GenomesTFCP2L1 
Exome Variant ServerTFCP2L1
ExAC (Exome Aggregation Consortium)TFCP2L1 (select the gene name)
Genetic variants : HAPMAP29842
Genomic Variants (DGV)TFCP2L1 [DGVbeta]
DECIPHERTFCP2L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTFCP2L1 
Mutations
ICGC Data PortalTFCP2L1 
TCGA Data PortalTFCP2L1 
Broad Tumor PortalTFCP2L1
OASIS PortalTFCP2L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTFCP2L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTFCP2L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TFCP2L1
DgiDB (Drug Gene Interaction Database)TFCP2L1
DoCM (Curated mutations)TFCP2L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TFCP2L1 (select a term)
intoGenTFCP2L1
Cancer3DTFCP2L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609785   
Orphanet
MedgenTFCP2L1
Genetic Testing Registry TFCP2L1
NextProtQ9NZI6 [Medical]
TSGene29842
GENETestsTFCP2L1
Target ValidationTFCP2L1
Huge Navigator TFCP2L1 [HugePedia]
snp3D : Map Gene to Disease29842
BioCentury BCIQTFCP2L1
ClinGenTFCP2L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29842
Chemical/Pharm GKB GenePA134980544
Clinical trialTFCP2L1
Miscellaneous
canSAR (ICR)TFCP2L1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTFCP2L1
EVEXTFCP2L1
GoPubMedTFCP2L1
iHOPTFCP2L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:45:21 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.