Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TFDP2 (transcription factor Dp-2 (E2F dimerization partner 2))

Identity

Other namesDP2
HGNC (Hugo) TFDP2
LocusID (NCBI) 7029
Location 3q23
Location_base_pair Starts at 141663270 and ends at 141868386 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TFDP2   11751
Cards
Entrez_Gene (NCBI)TFDP2  7029  transcription factor Dp-2 (E2F dimerization partner 2)
GeneCards (Weizmann)TFDP2
Ensembl hg19 (Hinxton)ENSG00000114126 [Gene_View]  chr3:141663270-141868386 [Contig_View]  TFDP2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000114126 [Gene_View]  chr3:141663270-141868386 [Contig_View]  TFDP2 [Vega]
ICGC DataPortalENSG00000114126
cBioPortalTFDP2
AceView (NCBI)TFDP2
Genatlas (Paris)TFDP2
WikiGenes7029
SOURCE (Princeton)TFDP2
Genomic and cartography
GoldenPath hg19 (UCSC)TFDP2  -     chr3:141663270-141868386 -  3q23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TFDP2  -     3q23   [Description]    (hg38-Dec_2013)
EnsemblTFDP2 - 3q23 [CytoView hg19]  TFDP2 - 3q23 [CytoView hg38]
Mapping of homologs : NCBITFDP2 [Mapview hg19]  TFDP2 [Mapview hg38]
OMIM602160   
Gene and transcription
Genbank (Entrez)AB528993 AK096450 AK303181 AK303634 AK314786
RefSeq transcript (Entrez)NM_001178138 NM_001178139 NM_001178140 NM_001178141 NM_001178142 NM_006286
RefSeq genomic (Entrez)AC_000135 NC_000003 NC_018914 NT_005612 NW_001838884 NW_004929311
Consensus coding sequences : CCDS (NCBI)TFDP2
Cluster EST : UnigeneHs.379018 [ NCBI ]
CGAP (NCI)Hs.379018
Alternative Splicing : Fast-db (Paris)GSHG0022116
Alternative Splicing GalleryENSG00000114126
Gene ExpressionTFDP2 [ NCBI-GEO ]     TFDP2 [ SEEK ]   TFDP2 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14188 (Uniprot)
NextProtQ14188  [Medical]
With graphics : InterProQ14188
Splice isoforms : SwissVarQ14188 (Swissvar)
Domains : Interpro (EBI)DP-2    E2F_TDP    Transc_factor_DP_C    Transcrpt_fac_DP    WHTH_DNA-bd_dom   
Related proteins : CluSTrQ14188
Domain families : Pfam (Sanger)DP (PF08781)    E2F_TDP (PF02319)   
Domain families : Pfam (NCBI)pfam08781    pfam02319   
DMDM Disease mutations7029
Blocks (Seattle)Q14188
PDB (SRS)1CF7   
PDB (PDBSum)1CF7   
PDB (IMB)1CF7   
PDB (RSDB)1CF7   
Human Protein AtlasENSG00000114126
Peptide AtlasQ14188
HPRD03696
IPIIPI00029096   IPI00296752   IPI00218877   IPI00295550   IPI00915033   IPI00982683   IPI00953655   IPI00944999   IPI00945078   IPI00946984   IPI00945493   IPI00794050   IPI00984927   IPI00946020   IPI00947391   IPI00795123   IPI00946333   
Protein Interaction databases
DIP (DOE-UCLA)Q14188
IntAct (EBI)Q14188
FunCoupENSG00000114126
BioGRIDTFDP2
IntegromeDBTFDP2
STRING (EMBL)TFDP2
Ontologies - Pathways
QuickGOQ14188
Ontology : AmiGOmitotic cell cycle  DNA binding  sequence-specific DNA binding transcription factor activity  transcription cofactor activity  nucleoplasm  transcription factor complex  transcription, DNA-templated  transcription initiation from RNA polymerase II promoter  transforming growth factor beta receptor signaling pathway  Notch signaling pathway  heart development  transcription factor binding  gene expression  protein domain specific binding  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBImitotic cell cycle  DNA binding  sequence-specific DNA binding transcription factor activity  transcription cofactor activity  nucleoplasm  transcription factor complex  transcription, DNA-templated  transcription initiation from RNA polymerase II promoter  transforming growth factor beta receptor signaling pathway  Notch signaling pathway  heart development  transcription factor binding  gene expression  protein domain specific binding  positive regulation of transcription from RNA polymerase II promoter  
Pathways : KEGGCell cycle   
Protein Interaction DatabaseTFDP2
DoCM (Curated mutations)TFDP2
Wikipedia pathwaysTFDP2
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerTFDP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TFDP2
dbVarTFDP2
ClinVarTFDP2
1000_GenomesTFDP2 
Exome Variant ServerTFDP2
SNP (GeneSNP Utah)TFDP2
SNP : HGBaseTFDP2
Genetic variants : HAPMAPTFDP2
Genomic VariantsTFDP2  TFDP2 [DGVbeta]
Mutations
ICGC Data PortalENSG00000114126 
Somatic Mutations in Cancer : COSMICTFDP2 
CONAN: Copy Number AnalysisTFDP2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)3:141663270-141868386
Mutations and Diseases : HGMDTFDP2
OMIM602160   
MedgenTFDP2
NextProtQ14188 [Medical]
GENETestsTFDP2
Disease Genetic AssociationTFDP2
Huge Navigator TFDP2 [HugePedia]  TFDP2 [HugeCancerGEM]
snp3D : Map Gene to Disease7029
DGIdb (Drug Gene Interaction db)TFDP2
General knowledge
Homologs : HomoloGeneTFDP2
Homology/Alignments : Family Browser (UCSC)TFDP2
Phylogenetic Trees/Animal Genes : TreeFamTFDP2
Chemical/Protein Interactions : CTD7029
Chemical/Pharm GKB GenePA36466
Clinical trialTFDP2
Cancer Resource (Charite)ENSG00000114126
Other databases
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
CoreMineTFDP2
GoPubMedTFDP2
iHOPTFDP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sun Dec 21 01:53:47 CET 2014
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