Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TFDP3 (transcription factor Dp family member 3)

Identity

Alias_namestranscription factor Dp family
Alias_symbol (synonym)HCA661
E2F-like
CT30
Other aliasDP4
HGNC (Hugo) TFDP3
LocusID (NCBI) 51270
Atlas_Id 52866
Location Xq26.2  [Link to chromosome band Xq26]
Location_base_pair Starts at 133216669 and ends at 133218348 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TFDP3   24603
Cards
Entrez_Gene (NCBI)TFDP3  51270  transcription factor Dp family member 3
AliasesCT30; DP4; HCA661
GeneCards (Weizmann)TFDP3
Ensembl hg19 (Hinxton)ENSG00000183434 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183434 [Gene_View]  chrX:133216669-133218348 [Contig_View]  TFDP3 [Vega]
ICGC DataPortalENSG00000183434
TCGA cBioPortalTFDP3
AceView (NCBI)TFDP3
Genatlas (Paris)TFDP3
WikiGenes51270
SOURCE (Princeton)TFDP3
Genetics Home Reference (NIH)TFDP3
Genomic and cartography
GoldenPath hg38 (UCSC)TFDP3  -     chrX:133216669-133218348 -  Xq26.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TFDP3  -     Xq26.2   [Description]    (hg19-Feb_2009)
EnsemblTFDP3 - Xq26.2 [CytoView hg19]  TFDP3 - Xq26.2 [CytoView hg38]
Mapping of homologs : NCBITFDP3 [Mapview hg19]  TFDP3 [Mapview hg38]
OMIM300772   
Gene and transcription
Genbank (Entrez)AF219119 BC074762 BC117336 BC126361 EU446842
RefSeq transcript (Entrez)NM_016521
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TFDP3
Cluster EST : UnigeneHs.142908 [ NCBI ]
CGAP (NCI)Hs.142908
Alternative Splicing GalleryENSG00000183434
Gene ExpressionTFDP3 [ NCBI-GEO ]   TFDP3 [ EBI - ARRAY_EXPRESS ]   TFDP3 [ SEEK ]   TFDP3 [ MEM ]
Gene Expression Viewer (FireBrowse)TFDP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51270
GTEX Portal (Tissue expression)TFDP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5H9I0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5H9I0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5H9I0
Splice isoforms : SwissVarQ5H9I0
PhosPhoSitePlusQ5H9I0
Domains : Interpro (EBI)E2F_WHTH_DNA-bd_dom    TFDP3    Transc_factor_DP_C    Transcrpt_fac_DP    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)DP (PF08781)    E2F_TDP (PF02319)   
Domain families : Pfam (NCBI)pfam08781    pfam02319   
Domain families : Smart (EMBL)DP (SM01138)  E2F_TDP (SM01372)  
Conserved Domain (NCBI)TFDP3
DMDM Disease mutations51270
Blocks (Seattle)TFDP3
SuperfamilyQ5H9I0
Human Protein AtlasENSG00000183434
Peptide AtlasQ5H9I0
HPRD06623
IPIIPI00176406   
Protein Interaction databases
DIP (DOE-UCLA)Q5H9I0
IntAct (EBI)Q5H9I0
FunCoupENSG00000183434
BioGRIDTFDP3
STRING (EMBL)TFDP3
ZODIACTFDP3
Ontologies - Pathways
QuickGOQ5H9I0
Ontology : AmiGOG1/S transition of mitotic cell cycle  RNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  nucleus  transcription factor complex  cytoplasm  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  cellular response to DNA damage stimulus  protein heterodimerization activity  
Ontology : EGO-EBIG1/S transition of mitotic cell cycle  RNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  nucleus  transcription factor complex  cytoplasm  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  cellular response to DNA damage stimulus  protein heterodimerization activity  
NDEx NetworkTFDP3
Atlas of Cancer Signalling NetworkTFDP3
Wikipedia pathwaysTFDP3
Orthology - Evolution
OrthoDB51270
GeneTree (enSembl)ENSG00000183434
Phylogenetic Trees/Animal Genes : TreeFamTFDP3
HOVERGENQ5H9I0
HOGENOMQ5H9I0
Homologs : HomoloGeneTFDP3
Homology/Alignments : Family Browser (UCSC)TFDP3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTFDP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TFDP3
dbVarTFDP3
ClinVarTFDP3
1000_GenomesTFDP3 
Exome Variant ServerTFDP3
ExAC (Exome Aggregation Consortium)TFDP3 (select the gene name)
Genetic variants : HAPMAP51270
Genomic Variants (DGV)TFDP3 [DGVbeta]
DECIPHERTFDP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTFDP3 
Mutations
ICGC Data PortalTFDP3 
TCGA Data PortalTFDP3 
Broad Tumor PortalTFDP3
OASIS PortalTFDP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTFDP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTFDP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch TFDP3
DgiDB (Drug Gene Interaction Database)TFDP3
DoCM (Curated mutations)TFDP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TFDP3 (select a term)
intoGenTFDP3
Cancer3DTFDP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300772   
Orphanet
MedgenTFDP3
Genetic Testing Registry TFDP3
NextProtQ5H9I0 [Medical]
TSGene51270
GENETestsTFDP3
Target ValidationTFDP3
Huge Navigator TFDP3 [HugePedia]
snp3D : Map Gene to Disease51270
BioCentury BCIQTFDP3
ClinGenTFDP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51270
Chemical/Pharm GKB GenePA134898258
Clinical trialTFDP3
Miscellaneous
canSAR (ICR)TFDP3 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTFDP3
EVEXTFDP3
GoPubMedTFDP3
iHOPTFDP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:16:46 CEST 2017
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.