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TFDP3 (transcription factor Dp family member 3)

Identity

Alias (NCBI)CT30
DP4
HCA661
HGNC (Hugo) TFDP3
HGNC Alias symbHCA661
E2F-like
CT30
HGNC Alias nameE2F-like protein
 cancer/testis antigen 30
HGNC Previous nametranscription factor Dp family, member 3
LocusID (NCBI) 51270
Atlas_Id 52866
Location Xq26.2  [Link to chromosome band Xq26]
Location_base_pair Starts at 133216662 and ends at 133218354 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  Pediatric T-Cell Acute Lymphoblastic Leukemia

External links

Nomenclature
HGNC (Hugo)TFDP3   24603
Cards
Entrez_Gene (NCBI)TFDP3    transcription factor Dp family member 3
AliasesCT30; DP4; HCA661
GeneCards (Weizmann)TFDP3
Ensembl hg19 (Hinxton)ENSG00000183434 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183434 [Gene_View]  ENSG00000183434 [Sequence]  chrX:133216662-133218354 [Contig_View]  TFDP3 [Vega]
ICGC DataPortalENSG00000183434
TCGA cBioPortalTFDP3
AceView (NCBI)TFDP3
Genatlas (Paris)TFDP3
SOURCE (Princeton)TFDP3
Genetics Home Reference (NIH)TFDP3
Genomic and cartography
GoldenPath hg38 (UCSC)TFDP3  -     chrX:133216662-133218354 -  Xq26.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TFDP3  -     Xq26.2   [Description]    (hg19-Feb_2009)
GoldenPathTFDP3 - Xq26.2 [CytoView hg19]  TFDP3 - Xq26.2 [CytoView hg38]
ImmunoBaseENSG00000183434
genome Data Viewer NCBITFDP3 [Mapview hg19]  
OMIM300772   
Gene and transcription
Genbank (Entrez)AF219119 BC074762 BC117336 BC126361
RefSeq transcript (Entrez)NM_016521
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TFDP3
Alternative Splicing GalleryENSG00000183434
Gene ExpressionTFDP3 [ NCBI-GEO ]   TFDP3 [ EBI - ARRAY_EXPRESS ]   TFDP3 [ SEEK ]   TFDP3 [ MEM ]
Gene Expression Viewer (FireBrowse)TFDP3 [ Firebrowse - Broad ]
GenevisibleExpression of TFDP3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51270
GTEX Portal (Tissue expression)TFDP3
Human Protein AtlasENSG00000183434-TFDP3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5H9I0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5H9I0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5H9I0
Splice isoforms : SwissVarQ5H9I0
PhosPhoSitePlusQ5H9I0
Domains : Interpro (EBI)E2F-DP_heterodim    E2F_WHTH_DNA-bd_dom    TF_DP_C_sf    TFDP3    Transc_factor_DP_C    Transcrpt_fac_DP    WH-like_DNA-bd_sf    WH_DNA-bd_sf   
Domain families : Pfam (Sanger)DP (PF08781)    E2F_TDP (PF02319)   
Domain families : Pfam (NCBI)pfam08781    pfam02319   
Domain families : Smart (EMBL)DP (SM01138)  E2F_TDP (SM01372)  
Conserved Domain (NCBI)TFDP3
Blocks (Seattle)TFDP3
SuperfamilyQ5H9I0
Human Protein Atlas [tissue]ENSG00000183434-TFDP3 [tissue]
Peptide AtlasQ5H9I0
HPRD06623
IPIIPI00176406   
Protein Interaction databases
DIP (DOE-UCLA)Q5H9I0
IntAct (EBI)Q5H9I0
BioGRIDTFDP3
STRING (EMBL)TFDP3
ZODIACTFDP3
Ontologies - Pathways
QuickGOQ5H9I0
Ontology : AmiGOG1/S transition of mitotic cell cycle  nuclear chromatin  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  nucleus  transcription factor complex  cytoplasm  regulation of transcription by RNA polymerase II  cellular response to DNA damage stimulus  transcription factor binding  activating transcription factor binding  negative regulation of DNA-binding transcription factor activity  negative regulation of G1/S transition of mitotic cell cycle  
Ontology : EGO-EBIG1/S transition of mitotic cell cycle  nuclear chromatin  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  nucleus  transcription factor complex  cytoplasm  regulation of transcription by RNA polymerase II  cellular response to DNA damage stimulus  transcription factor binding  activating transcription factor binding  negative regulation of DNA-binding transcription factor activity  negative regulation of G1/S transition of mitotic cell cycle  
NDEx NetworkTFDP3
Atlas of Cancer Signalling NetworkTFDP3
Wikipedia pathwaysTFDP3
Orthology - Evolution
OrthoDB51270
GeneTree (enSembl)ENSG00000183434
Phylogenetic Trees/Animal Genes : TreeFamTFDP3
HOGENOMQ5H9I0
Homologs : HomoloGeneTFDP3
Homology/Alignments : Family Browser (UCSC)TFDP3
Gene fusions - Rearrangements
Fusion : QuiverTFDP3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTFDP3 [hg38]
dbVarTFDP3
ClinVarTFDP3
MonarchTFDP3
1000_GenomesTFDP3 
Exome Variant ServerTFDP3
GNOMAD BrowserENSG00000183434
Varsome BrowserTFDP3
Genomic Variants (DGV)TFDP3 [DGVbeta]
DECIPHERTFDP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTFDP3 
Mutations
ICGC Data PortalTFDP3 
TCGA Data PortalTFDP3 
Broad Tumor PortalTFDP3
OASIS PortalTFDP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTFDP3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTFDP3
Mutations and Diseases : HGMDTFDP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch TFDP3
DgiDB (Drug Gene Interaction Database)TFDP3
DoCM (Curated mutations)TFDP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TFDP3 (select a term)
intoGenTFDP3
Cancer3DTFDP3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300772   
Orphanet
DisGeNETTFDP3
MedgenTFDP3
Genetic Testing Registry TFDP3
NextProtQ5H9I0 [Medical]
GENETestsTFDP3
Target ValidationTFDP3
Huge Navigator TFDP3 [HugePedia]
ClinGenTFDP3
Clinical trials, drugs, therapy
MyCancerGenomeTFDP3
Protein Interactions : CTD
Pharm GKB GenePA134898258
PharosQ5H9I0
Clinical trialTFDP3
Miscellaneous
canSAR (ICR)TFDP3 (select the gene name)
HarmonizomeTFDP3
DataMed IndexTFDP3
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTFDP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jan 1 18:40:58 CET 2021
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