| Nomenclature |
|---|
| HGNC (Hugo) | TFDP3 24603 |
| Cards |
|---|
| Entrez_Gene (NCBI) | TFDP3 51270 transcription factor Dp family member 3 |
| Aliases | CT30; DP4; HCA661 |
| GeneCards (Weizmann) | TFDP3 |
| Ensembl hg19 (Hinxton) | ENSG00000183434 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000183434 [Gene_View] ENSG00000183434 [Sequence] chrX:133216669-133218348 [Contig_View] TFDP3 [Vega] |
| ICGC DataPortal | ENSG00000183434 |
| TCGA cBioPortal | TFDP3 |
| AceView (NCBI) | TFDP3 |
| Genatlas (Paris) | TFDP3 |
| WikiGenes | 51270 |
| SOURCE (Princeton) | TFDP3 |
| Genetics Home Reference (NIH) | TFDP3 |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | TFDP3 - chrX:133216669-133218348 - Xq26.2 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | TFDP3 - Xq26.2 [Description] (hg19-Feb_2009) |
| Ensembl | TFDP3 - Xq26.2 [CytoView hg19] TFDP3 - Xq26.2 [CytoView hg38] |
| Mapping of homologs : NCBI | TFDP3 [Mapview hg19] TFDP3 [Mapview hg38] |
| OMIM | 300772 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AF219119 BC074762 BC117336 BC126361 |
| RefSeq transcript (Entrez) | NM_016521 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | TFDP3 |
| Cluster EST : Unigene | Hs.142908 [ NCBI ] |
| CGAP (NCI) | Hs.142908 |
| Alternative Splicing Gallery | ENSG00000183434 |
| Gene Expression | TFDP3 [ NCBI-GEO ] TFDP3 [ EBI - ARRAY_EXPRESS ]
TFDP3 [ SEEK ] TFDP3 [ MEM ] |
| Gene Expression Viewer (FireBrowse) | TFDP3 [ Firebrowse - Broad ] |
| SOURCE (Princeton) | Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60] |
| Genevestigator | Expression in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 51270 |
| GTEX Portal (Tissue expression) | TFDP3 |
| Human Protein Atlas | ENSG00000183434-TFDP3 [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | Q5H9I0 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | Q5H9I0 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | Q5H9I0 |
| Splice isoforms : SwissVar | Q5H9I0 |
| PhosPhoSitePlus | Q5H9I0 |
| Domains : Interpro (EBI) | E2F-DP_heterodim E2F_WHTH_DNA-bd_dom TF_DP_C_sf TFDP3 Transc_factor_DP_C Transcrpt_fac_DP WH-like_DNA-bd_sf WH_DNA-bd_sf |
| Domain families : Pfam (Sanger) | DP (PF08781) E2F_TDP (PF02319) |
| Domain families : Pfam (NCBI) | pfam08781 pfam02319 |
| Domain families : Smart (EMBL) | DP (SM01138) E2F_TDP (SM01372) |
| Conserved Domain (NCBI) | TFDP3 |
| DMDM Disease mutations | 51270 |
| Blocks (Seattle) | TFDP3 |
| Superfamily | Q5H9I0 |
| Human Protein Atlas [tissue] | ENSG00000183434-TFDP3 [tissue] |
| Peptide Atlas | Q5H9I0 |
| HPRD | 06623 |
| IPI | IPI00176406 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | Q5H9I0 |
| IntAct (EBI) | Q5H9I0 |
| FunCoup | ENSG00000183434 |
| BioGRID | TFDP3 |
| STRING (EMBL) | TFDP3 |
| ZODIAC | TFDP3 |
| Ontologies - Pathways |
|---|
| QuickGO | Q5H9I0 |
| Ontology : AmiGO | G1/S transition of mitotic cell cycle DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA binding nucleus transcription factor complex cytoplasm regulation of transcription by RNA polymerase II cellular response to DNA damage stimulus protein heterodimerization activity regulation of cell cycle |
| Ontology : EGO-EBI | G1/S transition of mitotic cell cycle DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA binding nucleus transcription factor complex cytoplasm regulation of transcription by RNA polymerase II cellular response to DNA damage stimulus protein heterodimerization activity regulation of cell cycle |
| NDEx Network | TFDP3 |
| Atlas of Cancer Signalling Network | TFDP3 |
| Wikipedia pathways | TFDP3 |
| Orthology - Evolution |
|---|
| OrthoDB | 51270 |
| GeneTree (enSembl) | ENSG00000183434 |
| Phylogenetic Trees/Animal Genes : TreeFam | TFDP3 |
| HOVERGEN | Q5H9I0 |
| HOGENOM | Q5H9I0 |
| Homologs : HomoloGene | TFDP3 |
| Homology/Alignments : Family Browser (UCSC) | TFDP3 |
| Gene fusions - Rearrangements |
|---|
| Fusion : Quiver | TFDP3 |
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | TFDP3 [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | TFDP3 |
| dbVar | TFDP3 |
| ClinVar | TFDP3 |
| 1000_Genomes | TFDP3 |
| Exome Variant Server | TFDP3 |
| ExAC (Exome Aggregation Consortium) | ENSG00000183434 |
| GNOMAD Browser | ENSG00000183434 |
| Varsome Browser | TFDP3 |
| Genetic variants : HAPMAP | 51270 |
| Genomic Variants (DGV) | TFDP3 [DGVbeta] |
| DECIPHER | TFDP3 [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | TFDP3 |
| Mutations |
|---|
| ICGC Data Portal | TFDP3 |
| TCGA Data Portal | TFDP3 |
| Broad Tumor Portal | TFDP3 |
| OASIS Portal | TFDP3 [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | TFDP3 [overview] [genome browser] [tissue] [distribution] |
| Mutations and Diseases : HGMD | TFDP3 |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| LOVD (Leiden Open Variation Database) | X-chromosome gene database |
| BioMuta | search TFDP3 |
| DgiDB (Drug Gene Interaction Database) | TFDP3 |
| DoCM (Curated mutations) | TFDP3 (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | TFDP3 (select a term) |
| intoGen | TFDP3 |
| Cancer3D | TFDP3(select the gene name) |
| Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 300772 |
| Orphanet | |
| DisGeNET | TFDP3 |
| Medgen | TFDP3 |
| Genetic Testing Registry | TFDP3
|
| NextProt | Q5H9I0 [Medical] |
| TSGene | 51270 |
| GENETests | TFDP3 |
| Target Validation | TFDP3 |
| Huge Navigator |
TFDP3 [HugePedia] |
| snp3D : Map Gene to Disease | 51270 |
| BioCentury BCIQ | TFDP3 |
| ClinGen | TFDP3 |
| Clinical trials, drugs, therapy |
|---|
| Chemical/Protein Interactions : CTD | 51270 |
| Chemical/Pharm GKB Gene | PA134898258 |
| Clinical trial | TFDP3 |
| Miscellaneous |
|---|
| canSAR (ICR) | TFDP3 (select the gene name) |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 18 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | TFDP3 |
| EVEX | TFDP3 |
| GoPubMed | TFDP3 |
| iHOP | TFDP3 |
