Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TFEC (transcription factor EC)

Identity

Other namesTCFEC
TFE-C
TFEC-L
TFECL
bHLHe34
hTFEC-L
HGNC (Hugo) TFEC
LocusID (NCBI) 22797
Location 7q31.2
Location_base_pair Starts at 115575202 and ends at 115670867 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TFEC   11754
Entrez_Gene (NCBI)TFEC  22797  transcription factor EC
Cards
GeneCards (Weizmann)TFEC
Ensembl (Hinxton)ENSG00000105967 [Gene_View]  chr7:115575202-115670867 [Contig_View]  TFEC [Vega]
AceView (NCBI)TFEC
Genatlas (Paris)TFEC
SOURCE (Stanford)NM_001018058 NM_001244583 NM_012252
Genomic and cartography
GoldenPath (UCSC)TFEC  -  7q31.2   chr7:115575202-115670867 -  7q31.2   [Description]    (hg19-Feb_2009)
EnsemblTFEC - 7q31.2 [CytoView]
Mapping of homologs : NCBITFEC [Mapview]
OMIM604732   
Gene and transcription
Genbank (Entrez)AJ608795 AK301479 AK313546 BC029891 BX538223
RefSeq transcript (SRS)NM_001018058 NM_001244583 NM_012252
RefSeq transcript (Entrez)NM_001018058 NM_001244583 NM_012252
RefSeq genomic (SRS)AC_000068 AC_000139 NC_000007 NC_018918 NG_030005 NT_007933 NT_079596 NW_001839071 NW_004078032
RefSeq genomic (Entrez)AC_000068 AC_000139 NC_000007 NC_018918 NG_030005 NT_007933 NT_079596 NW_001839071 NW_004078032
Consensus coding sequences : CCDS (NCBI)TFEC
Cluster EST : UnigeneHs.125962 [ SRS ] Hs.125962 [ NCBI ]
CGAP (NCI)Hs.125962
Alternative Splicing : Fast-db (Paris)GSHG0028510
Alternative Splicing GalleryENSG00000105967
Gene ExpressionTFEC [ NCBI-GEO ]   TFEC [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14948 (SRS) O14948 (Uniprot)
NextProtO14948
With graphics : InterProO14948
Splice isoforms : SwissVarO14948(Swissvar)
Domaine pattern : Prosite (SRS)BHLH (PS50888)   
Domaine pattern : Prosite (Expaxy)BHLH (PS50888)   
Domains : Interpro (SRS)bHLH_ZIP_TF    bHLH_ZIP_TF_MiT/TFE    HLH_dom    TFEC   
Domains : Interpro (EBI)bHLH_ZIP_TF    bHLH_ZIP_TF_MiT/TFE    HLH_dom    TFEC   
Related proteins : CluSTrO14948
Domain families : Pfam (SRS)DUF3371 (PF11851)    HLH (PF00010)   
Domain families : Pfam (Sanger)DUF3371 (PF11851)    HLH (PF00010)   
Domain families : Pfam (NCBI)pfam11851    pfam00010   
Domain families : Smart (EMBL)HLH (SM00353)  
DMDM22797
Blocks (Seattle)O14948
Human Protein AtlasENSG00000105967
HPRD05294
IPIIPI00016824   IPI00852594   IPI00167022   IPI00878954   IPI00657986   IPI00946731   
Protein Interaction databases
DIP (DOE-UCLA)O14948
IntAct (EBI)O14948
FunCoupENSG00000105967
REACTOMETFEC
Protein Interaction Database22797
BioGRIDTFEC
InParanoidO14948
Interologous Interaction database O14948
IntegromeDBTFEC
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TFEC
SNP (GeneSNP Utah)TFEC
SNP : HGBaseTFEC
Genetic variants : HAPMAPTFEC
Somatic Mutations in Cancer : COSMICTFEC 
CONAN: Copy Number AnalysisTFEC 
Mutations and Diseases : HGMDTFEC
OMIM604732   
GENETests604732   
Disease Genetic AssociationTFEC
Huge Navigator TFEC [HugePedia]  TFEC [HugeCancerGEM]
Genomic VariantsTFEC  TFEC [DGVbeta]
snp3D : Map Gene to Disease22797
General knowledge
Homologs : HomoloGeneTFEC
Homology/Alignments : Family Browser (UCSC)TFEC
Phylogenetic Trees/Animal Genes : TreeFamTFEC
Chemical/Protein Interactions : CTD22797
Chemical/Pharm GKB GenePA36469
Clinical trialTFEC
Cancer Resource (Charite)ENSG00000105967
Ontology : AmiGODNA binding  sequence-specific DNA binding transcription factor activity  transcription coactivator activity  transcription corepressor activity  nucleus  transcription, DNA-dependent  cellular response to heat  protein dimerization activity  
Ontology : EGO-EBIDNA binding  sequence-specific DNA binding transcription factor activity  transcription coactivator activity  transcription corepressor activity  nucleus  transcription, DNA-dependent  cellular response to heat  protein dimerization activity  
Other databases
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
PubGeneTFEC
iHOPTFEC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:21:58 CEST 2013
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