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TFIP11 (tuftelin interacting protein 11)

Identity

Alias (NCBI)NTR1
STIP
STIP-1
Spp382
TIP39
bK445C9.6
HGNC (Hugo) TFIP11
HGNC Alias symbTIP39
DKFZP434B194
Spp382
LocusID (NCBI) 24144
Atlas_Id 55589
Location 22q12.1  [Link to chromosome band 22q12]
Location_base_pair Starts at 26491240 and ends at 26512473 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CHD6 (20q12) / TFIP11 (22q12.1)DPP9 (19p13.3) / TFIP11 (22q12.1)PRKCD (3p21.1) / TFIP11 (22q12.1)
TFIP11 (22q12.1) / AMPD1 (1p13.2)TFIP11 (22q12.1) / C14orf37 (14q23.1)TFIP11 (22q12.1) / NDUFS3 (11p11.2)
TFIP11 (22q12.1) / U2AF1 (21q22.3)TMEM199 (17q11.2) / TFIP11 (22q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TFIP11   17165
Cards
Entrez_Gene (NCBI)TFIP11    tuftelin interacting protein 11
AliasesNTR1; STIP; STIP-1; Spp382; 
TIP39; bK445C9.6
GeneCards (Weizmann)TFIP11
Ensembl hg19 (Hinxton)ENSG00000100109 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100109 [Gene_View]  ENSG00000100109 [Sequence]  chr22:26491240-26512473 [Contig_View]  TFIP11 [Vega]
ICGC DataPortalENSG00000100109
TCGA cBioPortalTFIP11
AceView (NCBI)TFIP11
Genatlas (Paris)TFIP11
SOURCE (Princeton)TFIP11
Genetics Home Reference (NIH)TFIP11
Genomic and cartography
GoldenPath hg38 (UCSC)TFIP11  -     chr22:26491240-26512473 -  22q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TFIP11  -     22q12.1   [Description]    (hg19-Feb_2009)
GoldenPathTFIP11 - 22q12.1 [CytoView hg19]  TFIP11 - 22q12.1 [CytoView hg38]
ImmunoBaseENSG00000100109
Genome Data Viewer NCBITFIP11 [Mapview hg19]  
OMIM612747   
Gene and transcription
Genbank (Entrez)AF070662 AI468631 AK025443 AK025739 AK298303
RefSeq transcript (Entrez)NM_001008697 NM_001346857 NM_001346858 NM_001346859 NM_001346861 NM_001346862 NM_012143
Consensus coding sequences : CCDS (NCBI)TFIP11
Gene ExpressionTFIP11 [ NCBI-GEO ]   TFIP11 [ EBI - ARRAY_EXPRESS ]   TFIP11 [ SEEK ]   TFIP11 [ MEM ]
Gene Expression Viewer (FireBrowse)TFIP11 [ Firebrowse - Broad ]
GenevisibleExpression of TFIP11 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)24144
GTEX Portal (Tissue expression)TFIP11
Human Protein AtlasENSG00000100109-TFIP11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBB9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBB9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBB9
PhosPhoSitePlusQ9UBB9
Domaine pattern : Prosite (Expaxy)G_PATCH (PS50174)   
Domains : Interpro (EBI)G_patch_dom    GCFC_dom    STIP    STIP/TFIP11_N   
Domain families : Pfam (Sanger)G-patch (PF01585)    GCFC (PF07842)    TIP_N (PF12457)   
Domain families : Pfam (NCBI)pfam01585    pfam07842    pfam12457   
Domain families : Smart (EMBL)G_patch (SM00443)  
Conserved Domain (NCBI)TFIP11
SuperfamilyQ9UBB9
AlphaFold pdb e-kbQ9UBB9   
Human Protein Atlas [tissue]ENSG00000100109-TFIP11 [tissue]
HPRD11628
Protein Interaction databases
DIP (DOE-UCLA)Q9UBB9
IntAct (EBI)Q9UBB9
BioGRIDTFIP11
STRING (EMBL)TFIP11
ZODIACTFIP11
Ontologies - Pathways
QuickGOQ9UBB9
Ontology : AmiGOspliceosomal complex disassembly  spliceosomal complex disassembly  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  chromosome, telomeric region  nucleic acid binding  protein binding  nucleoplasm  spliceosomal complex  nucleolus  cytoplasm  RNA processing  nuclear speck  extracellular matrix  biomineral tissue development  negative regulation of protein-containing complex assembly  protection from non-homologous end joining at telomere  negative regulation of protein binding  U2-type post-mRNA release spliceosomal complex  U2-type post-mRNA release spliceosomal complex  catalytic step 2 spliceosome  negative regulation of DNA ligase activity  negative regulation of double-strand break repair via nonhomologous end joining  
Ontology : EGO-EBIspliceosomal complex disassembly  spliceosomal complex disassembly  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  chromosome, telomeric region  nucleic acid binding  protein binding  nucleoplasm  spliceosomal complex  nucleolus  cytoplasm  RNA processing  nuclear speck  extracellular matrix  biomineral tissue development  negative regulation of protein-containing complex assembly  protection from non-homologous end joining at telomere  negative regulation of protein binding  U2-type post-mRNA release spliceosomal complex  U2-type post-mRNA release spliceosomal complex  catalytic step 2 spliceosome  negative regulation of DNA ligase activity  negative regulation of double-strand break repair via nonhomologous end joining  
NDEx NetworkTFIP11
Atlas of Cancer Signalling NetworkTFIP11
Wikipedia pathwaysTFIP11
Orthology - Evolution
OrthoDB24144
GeneTree (enSembl)ENSG00000100109
Phylogenetic Trees/Animal Genes : TreeFamTFIP11
Homologs : HomoloGeneTFIP11
Homology/Alignments : Family Browser (UCSC)TFIP11
Gene fusions - Rearrangements
Fusion : QuiverTFIP11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTFIP11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TFIP11
dbVarTFIP11
ClinVarTFIP11
MonarchTFIP11
1000_GenomesTFIP11 
Exome Variant ServerTFIP11
GNOMAD BrowserENSG00000100109
Varsome BrowserTFIP11
ACMGTFIP11 variants
VarityQ9UBB9
Genomic Variants (DGV)TFIP11 [DGVbeta]
DECIPHERTFIP11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTFIP11 
Mutations
ICGC Data PortalTFIP11 
TCGA Data PortalTFIP11 
Broad Tumor PortalTFIP11
OASIS PortalTFIP11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTFIP11  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTFIP11
Mutations and Diseases : HGMDTFIP11
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTFIP11
DgiDB (Drug Gene Interaction Database)TFIP11
DoCM (Curated mutations)TFIP11
CIViC (Clinical Interpretations of Variants in Cancer)TFIP11
Cancer3DTFIP11
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612747   
Orphanet
DisGeNETTFIP11
MedgenTFIP11
Genetic Testing Registry TFIP11
NextProtQ9UBB9 [Medical]
GENETestsTFIP11
Target ValidationTFIP11
Huge Navigator TFIP11 [HugePedia]
ClinGenTFIP11
Clinical trials, drugs, therapy
MyCancerGenomeTFIP11
Protein Interactions : CTDTFIP11
Pharm GKB GenePA38441
PharosQ9UBB9
Clinical trialTFIP11
Miscellaneous
canSAR (ICR)TFIP11
HarmonizomeTFIP11
DataMed IndexTFIP11
Probes
Litterature
PubMed87 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTFIP11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:34:53 CEST 2021

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