Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TFIP11 (tuftelin interacting protein 11)

Identity

Alias_symbol (synonym)TIP39
DKFZP434B194
Spp382
Other aliasNTR1
STIP
STIP-1
bK445C9.6
HGNC (Hugo) TFIP11
LocusID (NCBI) 24144
Atlas_Id 55589
Location 22q12.1  [Link to chromosome band 22q12]
Location_base_pair Starts at 26491240 and ends at 26512506 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CHD6 (20q12) / TFIP11 (22q12.1)DPP9 (19p13.3) / TFIP11 (22q12.1)PRKCD (3p21.1) / TFIP11 (22q12.1)
TFIP11 (22q12.1) / AMPD1 (1p13.2)TFIP11 (22q12.1) / C14orf37 (14q23.1)TFIP11 (22q12.1) / NDUFS3 (11p11.2)
TFIP11 (22q12.1) / U2AF1 (21q22.3)TMEM199 (17q11.2) / TFIP11 (22q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TFIP11   17165
Cards
Entrez_Gene (NCBI)TFIP11  24144  tuftelin interacting protein 11
AliasesNTR1; STIP; STIP-1; Spp382; 
TIP39; bK445C9.6
GeneCards (Weizmann)TFIP11
Ensembl hg19 (Hinxton)ENSG00000100109 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100109 [Gene_View]  chr22:26491240-26512506 [Contig_View]  TFIP11 [Vega]
ICGC DataPortalENSG00000100109
TCGA cBioPortalTFIP11
AceView (NCBI)TFIP11
Genatlas (Paris)TFIP11
WikiGenes24144
SOURCE (Princeton)TFIP11
Genetics Home Reference (NIH)TFIP11
Genomic and cartography
GoldenPath hg38 (UCSC)TFIP11  -     chr22:26491240-26512506 -  22q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TFIP11  -     22q12.1   [Description]    (hg19-Feb_2009)
EnsemblTFIP11 - 22q12.1 [CytoView hg19]  TFIP11 - 22q12.1 [CytoView hg38]
Mapping of homologs : NCBITFIP11 [Mapview hg19]  TFIP11 [Mapview hg38]
OMIM612747   
Gene and transcription
Genbank (Entrez)AF070662 AI468631 AK025443 AK025739 AK298303
RefSeq transcript (Entrez)NM_001008697 NM_001346857 NM_001346858 NM_001346859 NM_001346861 NM_001346862 NM_012143
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TFIP11
Cluster EST : UnigeneHs.20225 [ NCBI ]
CGAP (NCI)Hs.20225
Alternative Splicing GalleryENSG00000100109
Gene ExpressionTFIP11 [ NCBI-GEO ]   TFIP11 [ EBI - ARRAY_EXPRESS ]   TFIP11 [ SEEK ]   TFIP11 [ MEM ]
Gene Expression Viewer (FireBrowse)TFIP11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)24144
GTEX Portal (Tissue expression)TFIP11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBB9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBB9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBB9
Splice isoforms : SwissVarQ9UBB9
PhosPhoSitePlusQ9UBB9
Domaine pattern : Prosite (Expaxy)G_PATCH (PS50174)   
Domains : Interpro (EBI)G_patch_dom    GCFC_dom    STIP    STIP/TFIP11_N   
Domain families : Pfam (Sanger)G-patch (PF01585)    GCFC (PF07842)    TIP_N (PF12457)   
Domain families : Pfam (NCBI)pfam01585    pfam07842    pfam12457   
Domain families : Smart (EMBL)G_patch (SM00443)  
Conserved Domain (NCBI)TFIP11
DMDM Disease mutations24144
Blocks (Seattle)TFIP11
SuperfamilyQ9UBB9
Human Protein AtlasENSG00000100109
Peptide AtlasQ9UBB9
HPRD11628
IPIIPI00015924   IPI00220893   IPI00910595   IPI00879058   IPI00941082   IPI00878423   IPI01021629   IPI00878738   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBB9
IntAct (EBI)Q9UBB9
FunCoupENSG00000100109
BioGRIDTFIP11
STRING (EMBL)TFIP11
ZODIACTFIP11
Ontologies - Pathways
QuickGOQ9UBB9
Ontology : AmiGOspliceosomal complex disassembly  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  nuclear chromosome, telomeric region  DNA binding  protein binding  proteinaceous extracellular matrix  nucleoplasm  spliceosomal complex  nucleolus  cytoplasm  regulation of transcription, DNA-templated  RNA processing  nuclear speck  biomineral tissue development  negative regulation of protein complex assembly  protection from non-homologous end joining at telomere  negative regulation of protein binding  U2-type post-mRNA release spliceosomal complex  catalytic step 2 spliceosome  negative regulation of DNA ligase activity  negative regulation of double-strand break repair via nonhomologous end joining  
Ontology : EGO-EBIspliceosomal complex disassembly  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  nuclear chromosome, telomeric region  DNA binding  protein binding  proteinaceous extracellular matrix  nucleoplasm  spliceosomal complex  nucleolus  cytoplasm  regulation of transcription, DNA-templated  RNA processing  nuclear speck  biomineral tissue development  negative regulation of protein complex assembly  protection from non-homologous end joining at telomere  negative regulation of protein binding  U2-type post-mRNA release spliceosomal complex  catalytic step 2 spliceosome  negative regulation of DNA ligase activity  negative regulation of double-strand break repair via nonhomologous end joining  
NDEx NetworkTFIP11
Atlas of Cancer Signalling NetworkTFIP11
Wikipedia pathwaysTFIP11
Orthology - Evolution
OrthoDB24144
GeneTree (enSembl)ENSG00000100109
Phylogenetic Trees/Animal Genes : TreeFamTFIP11
HOVERGENQ9UBB9
HOGENOMQ9UBB9
Homologs : HomoloGeneTFIP11
Homology/Alignments : Family Browser (UCSC)TFIP11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTFIP11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TFIP11
dbVarTFIP11
ClinVarTFIP11
1000_GenomesTFIP11 
Exome Variant ServerTFIP11
ExAC (Exome Aggregation Consortium)TFIP11 (select the gene name)
Genetic variants : HAPMAP24144
Genomic Variants (DGV)TFIP11 [DGVbeta]
DECIPHERTFIP11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTFIP11 
Mutations
ICGC Data PortalTFIP11 
TCGA Data PortalTFIP11 
Broad Tumor PortalTFIP11
OASIS PortalTFIP11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTFIP11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTFIP11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TFIP11
DgiDB (Drug Gene Interaction Database)TFIP11
DoCM (Curated mutations)TFIP11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TFIP11 (select a term)
intoGenTFIP11
Cancer3DTFIP11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612747   
Orphanet
MedgenTFIP11
Genetic Testing Registry TFIP11
NextProtQ9UBB9 [Medical]
TSGene24144
GENETestsTFIP11
Target ValidationTFIP11
Huge Navigator TFIP11 [HugePedia]
snp3D : Map Gene to Disease24144
BioCentury BCIQTFIP11
ClinGenTFIP11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD24144
Chemical/Pharm GKB GenePA38441
Clinical trialTFIP11
Miscellaneous
canSAR (ICR)TFIP11 (select the gene name)
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTFIP11
EVEXTFIP11
GoPubMedTFIP11
iHOPTFIP11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:59:10 CEST 2017

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