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TGDS (TDP-glucose 4,6-dehydratase)

Identity

Alias_symbol (synonym)TDPGD
SDR2E1
Other aliasCATMANS
HGNC (Hugo) TGDS
LocusID (NCBI) 23483
Atlas_Id 74655
Location 13q32.1  [Link to chromosome band 13q32]
Location_base_pair Starts at 94574054 and ends at 94596275 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TGDS (13q32.1) / DAPK1 (9q21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TGDS   20324
Cards
Entrez_Gene (NCBI)TGDS  23483  TDP-glucose 4,6-dehydratase
AliasesCATMANS; SDR2E1; TDPGD
GeneCards (Weizmann)TGDS
Ensembl hg19 (Hinxton)ENSG00000088451 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000088451 [Gene_View]  chr13:94574054-94596275 [Contig_View]  TGDS [Vega]
ICGC DataPortalENSG00000088451
TCGA cBioPortalTGDS
AceView (NCBI)TGDS
Genatlas (Paris)TGDS
WikiGenes23483
SOURCE (Princeton)TGDS
Genetics Home Reference (NIH)TGDS
Genomic and cartography
GoldenPath hg38 (UCSC)TGDS  -     chr13:94574054-94596275 -  13q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TGDS  -     13q32.1   [Description]    (hg19-Feb_2009)
EnsemblTGDS - 13q32.1 [CytoView hg19]  TGDS - 13q32.1 [CytoView hg38]
Mapping of homologs : NCBITGDS [Mapview hg19]  TGDS [Mapview hg38]
OMIM616145   616146   
Gene and transcription
Genbank (Entrez)AF048686 AJ006068 AK303439 AK313251 AL527626
RefSeq transcript (Entrez)NM_001304430 NM_014305
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TGDS
Cluster EST : UnigeneHs.12393 [ NCBI ]
CGAP (NCI)Hs.12393
Alternative Splicing GalleryENSG00000088451
Gene ExpressionTGDS [ NCBI-GEO ]   TGDS [ EBI - ARRAY_EXPRESS ]   TGDS [ SEEK ]   TGDS [ MEM ]
Gene Expression Viewer (FireBrowse)TGDS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23483
GTEX Portal (Tissue expression)TGDS
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95455   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95455  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95455
Splice isoforms : SwissVarO95455
PhosPhoSitePlusO95455
Domains : Interpro (EBI)NAD(P)-bd_dom   
Domain families : Pfam (Sanger)GDP_Man_Dehyd (PF16363)   
Domain families : Pfam (NCBI)pfam16363   
Conserved Domain (NCBI)TGDS
DMDM Disease mutations23483
Blocks (Seattle)TGDS
SuperfamilyO95455
Human Protein AtlasENSG00000088451
Peptide AtlasO95455
HPRD15494
IPIIPI00003774   
Protein Interaction databases
DIP (DOE-UCLA)O95455
IntAct (EBI)O95455
FunCoupENSG00000088451
BioGRIDTGDS
STRING (EMBL)TGDS
ZODIACTGDS
Ontologies - Pathways
QuickGOO95455
Ontology : AmiGOdTDP-glucose 4,6-dehydratase activity  
Ontology : EGO-EBIdTDP-glucose 4,6-dehydratase activity  
NDEx NetworkTGDS
Atlas of Cancer Signalling NetworkTGDS
Wikipedia pathwaysTGDS
Orthology - Evolution
OrthoDB23483
GeneTree (enSembl)ENSG00000088451
Phylogenetic Trees/Animal Genes : TreeFamTGDS
HOVERGENO95455
HOGENOMO95455
Homologs : HomoloGeneTGDS
Homology/Alignments : Family Browser (UCSC)TGDS
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTGDS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TGDS
dbVarTGDS
ClinVarTGDS
1000_GenomesTGDS 
Exome Variant ServerTGDS
ExAC (Exome Aggregation Consortium)TGDS (select the gene name)
Genetic variants : HAPMAP23483
Genomic Variants (DGV)TGDS [DGVbeta]
DECIPHERTGDS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTGDS 
Mutations
ICGC Data PortalTGDS 
TCGA Data PortalTGDS 
Broad Tumor PortalTGDS
OASIS PortalTGDS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTGDS  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTGDS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TGDS
DgiDB (Drug Gene Interaction Database)TGDS
DoCM (Curated mutations)TGDS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TGDS (select a term)
intoGenTGDS
Cancer3DTGDS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616145    616146   
Orphanet1594   
MedgenTGDS
Genetic Testing Registry TGDS
NextProtO95455 [Medical]
TSGene23483
GENETestsTGDS
Target ValidationTGDS
Huge Navigator TGDS [HugePedia]
snp3D : Map Gene to Disease23483
BioCentury BCIQTGDS
ClinGenTGDS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23483
Chemical/Pharm GKB GenePA128395791
Clinical trialTGDS
Miscellaneous
canSAR (ICR)TGDS (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTGDS
EVEXTGDS
GoPubMedTGDS
iHOPTGDS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Aug 1 16:41:29 CEST 2017

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