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TGFA-IT1 (TGFA intronic transcript 1)

Identity

Alias_namesTGFA intronic transcript 1 (non-protein coding)
Other alias-
HGNC (Hugo) TGFA-IT1
LocusID (NCBI) 100874273
Atlas_Id 74656
Location 2p13.3  [Link to chromosome band 2p13]
Location_base_pair Starts at 70467385 and ends at 70481640 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TGFA-IT1   41389
Cards
Entrez_Gene (NCBI)TGFA-IT1  100874273  TGFA intronic transcript 1
Aliases
GeneCards (Weizmann)TGFA-IT1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:70467385-70481640 [Contig_View]  TGFA-IT1 [Vega]
TCGA cBioPortalTGFA-IT1
AceView (NCBI)TGFA-IT1
Genatlas (Paris)TGFA-IT1
WikiGenes100874273
SOURCE (Princeton)TGFA-IT1
Genetics Home Reference (NIH)TGFA-IT1
Genomic and cartography
GoldenPath hg38 (UCSC)TGFA-IT1  -     chr2:70467385-70481640 -  2p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TGFA-IT1  -     2p13.3   [Description]    (hg19-Feb_2009)
EnsemblTGFA-IT1 - 2p13.3 [CytoView hg19]  TGFA-IT1 - 2p13.3 [CytoView hg38]
Mapping of homologs : NCBITGFA-IT1 [Mapview hg19]  TGFA-IT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL705569 DB457677
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TGFA-IT1
Cluster EST : UnigeneHs.682157 [ NCBI ]
CGAP (NCI)Hs.682157
Gene ExpressionTGFA-IT1 [ NCBI-GEO ]   TGFA-IT1 [ EBI - ARRAY_EXPRESS ]   TGFA-IT1 [ SEEK ]   TGFA-IT1 [ MEM ]
Gene Expression Viewer (FireBrowse)TGFA-IT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874273
GTEX Portal (Tissue expression)TGFA-IT1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TGFA-IT1
DMDM Disease mutations100874273
Blocks (Seattle)TGFA-IT1
Protein Interaction databases
BioGRIDTGFA-IT1
STRING (EMBL)TGFA-IT1
ZODIACTGFA-IT1
Ontologies - Pathways
Huge Navigator TGFA-IT1 [HugePedia]
snp3D : Map Gene to Disease100874273
BioCentury BCIQTGFA-IT1
ClinGenTGFA-IT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874273
Clinical trialTGFA-IT1
Miscellaneous
canSAR (ICR)TGFA-IT1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTGFA-IT1
EVEXTGFA-IT1
GoPubMedTGFA-IT1
iHOPTGFA-IT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:45:22 CEST 2017

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