Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TGFB3 (transforming growth factor, beta 3)

Identity

Other namesARVD
ARVD1
RNHF
TGF-beta3
HGNC (Hugo) TGFB3
LocusID (NCBI) 7043
Location 14q24.3
Location_base_pair Starts at 76424442 and ends at 76448092 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas)

Solid Tumors AmeloblastomID5945

External links

Nomenclature
HGNC (Hugo)TGFB3   11769
Cards
Entrez_Gene (NCBI)TGFB3  7043  transforming growth factor, beta 3
GeneCards (Weizmann)TGFB3
Ensembl (Hinxton) [Gene_View]  chr14:76424442-76448092 [Contig_View]  TGFB3 [Vega]
AceView (NCBI)TGFB3
Genatlas (Paris)TGFB3
WikiGenes7043
SOURCE (Princeton)NM_003239
Genomic and cartography
GoldenPath (UCSC)TGFB3  -  14q24.3   chr14:76424442-76448092 -  14q24.3   [Description]    (hg19-Feb_2009)
EnsemblTGFB3 - 14q24.3 [CytoView]
Mapping of homologs : NCBITGFB3 [Mapview]
OMIM107970   190230   615582   
Gene and transcription
Genbank (Entrez)AA778162 AK122902 AK313564 BC018503 BT007287
RefSeq transcript (Entrez)NM_003239
RefSeq genomic (Entrez)AC_000146 NC_000014 NC_018925 NG_011715 NT_026437 NW_001838113 NW_004929393
Consensus coding sequences : CCDS (NCBI)TGFB3
Cluster EST : UnigeneHs.713281 [ NCBI ]
CGAP (NCI)Hs.713281
Alternative Splicing : Fast-db (Paris)GSHG0009505
Gene ExpressionTGFB3 [ NCBI-GEO ]     TGFB3 [ SEEK ]   TGFB3 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP10600 (Uniprot)
NextProtP10600  [Medical]
With graphics : InterProP10600
Splice isoforms : SwissVarP10600 (Swissvar)
Domaine pattern : Prosite (Expaxy)TGF_BETA_1 (PS00250)    TGF_BETA_2 (PS51362)   
Domains : Interpro (EBI)Cystine-knot_cytokine    TGF-b_C    TGF-b_N    TGF-beta    TGF-beta-rel    TGFb_CS    Transform_grow_fac_b3   
Related proteins : CluSTrP10600
Domain families : Pfam (Sanger)TGF_beta (PF00019)    TGFb_propeptide (PF00688)   
Domain families : Pfam (NCBI)pfam00019    pfam00688   
Domain families : Smart (EMBL)TGFB (SM00204)  
DMDM Disease mutations7043
Blocks (Seattle)P10600
PDB (SRS)1KTZ    1TGJ    1TGK    2PJY    3EO1   
PDB (PDBSum)1KTZ    1TGJ    1TGK    2PJY    3EO1   
PDB (IMB)1KTZ    1TGJ    1TGK    2PJY    3EO1   
PDB (RSDB)1KTZ    1TGJ    1TGK    2PJY    3EO1   
Peptide AtlasP10600
HPRD01829
IPIIPI00021780   IPI01025810   
Protein Interaction databases
DIP (DOE-UCLA)P10600
IntAct (EBI)P10600
BioGRIDTGFB3
InParanoidP10600
Interologous Interaction database P10600
IntegromeDBTGFB3
STRING (EMBL)TGFB3
Ontologies - Pathways
Ontology : AmiGOactivation of MAPK activity  response to hypoxia  in utero embryonic development  platelet degranulation  type II transforming growth factor beta receptor binding  type II transforming growth factor beta receptor binding  protein binding  protein binding  extracellular region  extracellular space  nucleus  plasma membrane  transforming growth factor beta receptor signaling pathway  SMAD protein import into nucleus  salivary gland morphogenesis  female pregnancy  aging  blood coagulation  growth factor activity  negative regulation of DNA replication  negative regulation of cell proliferation  cell surface  positive regulation of epithelial to mesenchymal transition  positive regulation of epithelial to mesenchymal transition  positive regulation of pathway-restricted SMAD protein phosphorylation  negative regulation of macrophage cytokine production  cell growth  menstrual cycle phase  platelet activation  extracellular matrix organization  T-tubule  positive regulation of bone mineralization  negative regulation of transforming growth factor beta receptor signaling pathway  mammary gland development  extracellular matrix  platelet alpha granule lumen  response to progesterone  positive regulation of collagen biosynthetic process  response to laminar fluid shear stress  type I transforming growth factor beta receptor binding  odontogenesis  identical protein binding  neuronal cell body  positive regulation of apoptotic process  negative regulation of neuron apoptotic process  response to estrogen  ossification involved in bone remodeling  cell-cell junction organization  positive regulation of DNA replication  positive regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  protein heterodimerization activity  lung alveolus development  digestive tract development  embryonic neurocranium morphogenesis  inner ear development  transforming growth factor beta binding  positive regulation of protein secretion  positive regulation of filopodium assembly  positive regulation of cell division  palate development  face morphogenesis  frontal suture morphogenesis  positive regulation of SMAD protein import into nucleus  detection of hypoxia  
Ontology : EGO-EBIactivation of MAPK activity  response to hypoxia  in utero embryonic development  platelet degranulation  type II transforming growth factor beta receptor binding  type II transforming growth factor beta receptor binding  protein binding  protein binding  extracellular region  extracellular space  nucleus  plasma membrane  transforming growth factor beta receptor signaling pathway  SMAD protein import into nucleus  salivary gland morphogenesis  female pregnancy  aging  blood coagulation  growth factor activity  negative regulation of DNA replication  negative regulation of cell proliferation  cell surface  positive regulation of epithelial to mesenchymal transition  positive regulation of epithelial to mesenchymal transition  positive regulation of pathway-restricted SMAD protein phosphorylation  negative regulation of macrophage cytokine production  cell growth  menstrual cycle phase  platelet activation  extracellular matrix organization  T-tubule  positive regulation of bone mineralization  negative regulation of transforming growth factor beta receptor signaling pathway  mammary gland development  extracellular matrix  platelet alpha granule lumen  response to progesterone  positive regulation of collagen biosynthetic process  response to laminar fluid shear stress  type I transforming growth factor beta receptor binding  odontogenesis  identical protein binding  neuronal cell body  positive regulation of apoptotic process  negative regulation of neuron apoptotic process  response to estrogen  ossification involved in bone remodeling  cell-cell junction organization  positive regulation of DNA replication  positive regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  protein heterodimerization activity  lung alveolus development  digestive tract development  embryonic neurocranium morphogenesis  inner ear development  transforming growth factor beta binding  positive regulation of protein secretion  positive regulation of filopodium assembly  positive regulation of cell division  palate development  face morphogenesis  frontal suture morphogenesis  positive regulation of SMAD protein import into nucleus  detection of hypoxia  
Pathways : BIOCARTACell Cycle: G1/S Check Point [Genes]    ALK in cardiac myocytes [Genes]    Erythrocyte Differentiation Pathway [Genes]    Role of Tob in T-cell activation [Genes]    Function of SLRP in Bone: An Integrated View [Genes]    p38 MAPK Signaling Pathway [Genes]    Signal transduction through IL1R [Genes]    Selective expression of chemokine receptors during T-cell polarization [Genes]    Cytokines and Inflammatory Response [Genes]    MAPKinase Signaling Pathway [Genes]    TGF beta signaling pathway [Genes]    CTCF: First Multivalent Nuclear Factor [Genes]   
Pathways : KEGGMAPK signaling pathway    Cytokine-cytokine receptor interaction    FoxO signaling pathway    Cell cycle    Endocytosis    TGF-beta signaling pathway    Hippo signaling pathway    Leishmaniasis    Chagas disease (American trypanosomiasis)    Malaria    Toxoplasmosis    Amoebiasis    Tuberculosis    Hepatitis B    HTLV-I infection    Pathways in cancer    Colorectal cancer    Renal cell carcinoma    Pancreatic cancer    Chronic myeloid leukemia    Inflammatory bowel disease (IBD)    Rheumatoid arthritis    Hypertrophic cardiomyopathy (HCM)    Dilated cardiomyopathy   
Protein Interaction DatabaseTGFB3
Wikipedia pathwaysTGFB3
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TGFB3
SNP (GeneSNP Utah)TGFB3
SNP : HGBaseTGFB3
Genetic variants : HAPMAPTGFB3
1000_GenomesTGFB3 
CONAN: Copy Number AnalysisTGFB3 
Somatic Mutations in Cancer : COSMICTGFB3 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)ARVD/C Genetic Variants Database
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
Mutations and Diseases : HGMDTGFB3
OMIM107970    190230    615582   
MedgenTGFB3
GENETestsTGFB3
Disease Genetic AssociationTGFB3
Huge Navigator TGFB3 [HugePedia]  TGFB3 [HugeCancerGEM]
Genomic VariantsTGFB3  TGFB3 [DGVbeta]
Exome VariantTGFB3
dbVarTGFB3
ClinVarTGFB3
snp3D : Map Gene to Disease7043
General knowledge
Homologs : HomoloGeneTGFB3
Homology/Alignments : Family Browser (UCSC)TGFB3
Phylogenetic Trees/Animal Genes : TreeFamTGFB3
Chemical/Protein Interactions : CTD7043
Chemical/Pharm GKB GenePA36483
Clinical trialTGFB3
Other databases
Probes
Litterature
PubMed159 Pubmed reference(s) in Entrez
CoreMineTGFB3
iHOPTGFB3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 13:21:17 CEST 2014

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