Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TGFBR1 (transforming growth factor, beta receptor 1)

Identity

Other namesAAT5
ACVRLK4
ALK-5
ALK5
ESS1
LDS1
LDS1A
LDS2A
MSSE
SKR4
TGFR-1
HGNC (Hugo) TGFBR1
LocusID (NCBI) 7046
Location 9q22.33
Location_base_pair Starts at 101867412 and ends at 101916473 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TGFBR1   11772
Cards
Entrez_Gene (NCBI)TGFBR1  7046  transforming growth factor, beta receptor 1
GeneCards (Weizmann)TGFBR1
Ensembl hg19 (Hinxton)ENSG00000106799 [Gene_View]  chr9:101867412-101916473 [Contig_View]  TGFBR1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000106799 [Gene_View]  chr9:101867412-101916473 [Contig_View]  TGFBR1 [Vega]
ICGC DataPortalENSG00000106799
cBioPortalTGFBR1
AceView (NCBI)TGFBR1
Genatlas (Paris)TGFBR1
WikiGenes7046
SOURCE (Princeton)TGFBR1
Genomic and cartography
GoldenPath hg19 (UCSC)TGFBR1  -     chr9:101867412-101916473 +  9q22.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TGFBR1  -     9q22.33   [Description]    (hg38-Dec_2013)
EnsemblTGFBR1 - 9q22.33 [CytoView hg19]  TGFBR1 - 9q22.33 [CytoView hg38]
Mapping of homologs : NCBITGFBR1 [Mapview hg19]  TGFBR1 [Mapview hg38]
OMIM132800   190181   609192   
Gene and transcription
Genbank (Entrez)AJ420419 AJ619019 AJ619020 AK002171 AK129793
RefSeq transcript (Entrez)NM_001130916 NM_004612
RefSeq genomic (Entrez)AC_000141 NC_000009 NC_018920 NG_007461 NT_008470 NW_001839236 NW_004929366
Consensus coding sequences : CCDS (NCBI)TGFBR1
Cluster EST : UnigeneHs.494622 [ NCBI ]
CGAP (NCI)Hs.494622
Alternative Splicing : Fast-db (Paris)GSHG0030313
Alternative Splicing GalleryENSG00000106799
Gene ExpressionTGFBR1 [ NCBI-GEO ]     TGFBR1 [ SEEK ]   TGFBR1 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP36897 (Uniprot)
NextProtP36897  [Medical]
With graphics : InterProP36897
Splice isoforms : SwissVarP36897 (Swissvar)
Catalytic activity : Enzyme2.7.11.30 [ Enzyme-Expasy ]   2.7.11.302.7.11.30 [ IntEnz-EBI ]   2.7.11.30 [ BRENDA ]   2.7.11.30 [ KEGG ]   
Domaine pattern : Prosite (Expaxy)GS (PS51256)    PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domains : Interpro (EBI)Activin_rcpt    Kinase-like_dom    Prot_kinase_dom    Protein_kinase_ATP_BS    Ser/Thr_kinase_AS    TGF_beta_rcpt_GS    TGFB_receptor   
Related proteins : CluSTrP36897
Domain families : Pfam (Sanger)Activin_recp (PF01064)    Pkinase (PF00069)    TGF_beta_GS (PF08515)   
Domain families : Pfam (NCBI)pfam01064    pfam00069    pfam08515   
Domain families : Smart (EMBL)GS (SM00467)  
DMDM Disease mutations7046
Blocks (Seattle)P36897
PDB (SRS)1B6C    1IAS    1PY5    1RW8    1TBI    1VJY    2L5S    2PJY    2WOT    2WOU    2X7O    3FAA    3GXL    3HMM    3KCF    3KFD    3TZM   
PDB (PDBSum)1B6C    1IAS    1PY5    1RW8    1TBI    1VJY    2L5S    2PJY    2WOT    2WOU    2X7O    3FAA    3GXL    3HMM    3KCF    3KFD    3TZM   
PDB (IMB)1B6C    1IAS    1PY5    1RW8    1TBI    1VJY    2L5S    2PJY    2WOT    2WOU    2X7O    3FAA    3GXL    3HMM    3KCF    3KFD    3TZM   
PDB (RSDB)1B6C    1IAS    1PY5    1RW8    1TBI    1VJY    2L5S    2PJY    2WOT    2WOU    2X7O    3FAA    3GXL    3HMM    3KCF    3KFD    3TZM   
Human Protein AtlasENSG00000106799
Peptide AtlasP36897
HPRD01822
IPIIPI00005733   IPI01018344   IPI00844074   IPI01014570   IPI01010650   IPI01021053   IPI01021173   IPI01022170   IPI01022370   IPI01021295   IPI01022749   IPI01022905   
Protein Interaction databases
DIP (DOE-UCLA)P36897
IntAct (EBI)P36897
FunCoupENSG00000106799
BioGRIDTGFBR1
IntegromeDBTGFBR1
STRING (EMBL)TGFBR1
Ontologies - Pathways
QuickGOP36897
Ontology : AmiGOactivation of MAPKK activity  skeletal system development  angiogenesis  in utero embryonic development  kidney development  blastocyst development  epithelial to mesenchymal transition  negative regulation of endothelial cell proliferation  lens development in camera-type eye  protein kinase activity  protein serine/threonine kinase activity  receptor signaling protein serine/threonine kinase activity  transforming growth factor beta-activated receptor activity  transforming growth factor beta-activated receptor activity  transforming growth factor beta-activated receptor activity  transforming growth factor beta-activated receptor activity  transforming growth factor beta receptor activity, type I  type II transforming growth factor beta receptor binding  type II transforming growth factor beta receptor binding  protein binding  ATP binding  plasma membrane  plasma membrane  tight junction  regulation of transcription, DNA-templated  regulation of transcription, DNA-templated  protein phosphorylation  apoptotic process  cell cycle arrest  signal transduction  transforming growth factor beta receptor signaling pathway  transforming growth factor beta receptor signaling pathway  transforming growth factor beta receptor signaling pathway  transforming growth factor beta receptor signaling pathway  heart development  positive regulation of cell proliferation  germ cell migration  post-embryonic development  anterior/posterior pattern specification  positive regulation of pathway-restricted SMAD protein phosphorylation  peptidyl-serine phosphorylation  peptidyl-threonine phosphorylation  growth factor binding  signal transduction by phosphorylation  collagen fibril organization  positive regulation of cell growth  negative regulation of transforming growth factor beta receptor signaling pathway  regulation of protein ubiquitination  negative regulation of chondrocyte differentiation  wound healing  extracellular structure organization  negative regulation of apoptotic process  receptor complex  regulation of protein binding  endothelial cell migration  positive regulation of transcription, DNA-templated  SMAD binding  SMAD binding  metal ion binding  thymus development  neuron fate commitment  embryonic cranial skeleton morphogenesis  skeletal system morphogenesis  mesenchymal cell differentiation  artery morphogenesis  cell motility  transforming growth factor beta binding  transforming growth factor beta binding  transforming growth factor beta binding  positive regulation of cellular component movement  positive regulation of filopodium assembly  positive regulation of protein kinase B signaling  parathyroid gland development  palate development  pharyngeal system development  pathway-restricted SMAD protein phosphorylation  positive regulation of SMAD protein import into nucleus  transforming growth factor beta receptor homodimeric complex  I-SMAD binding  response to cholesterol  cellular response to transforming growth factor beta stimulus  positive regulation of apoptotic signaling pathway  negative regulation of extrinsic apoptotic signaling pathway  
Ontology : EGO-EBIactivation of MAPKK activity  skeletal system development  angiogenesis  in utero embryonic development  kidney development  blastocyst development  epithelial to mesenchymal transition  negative regulation of endothelial cell proliferation  lens development in camera-type eye  protein kinase activity  protein serine/threonine kinase activity  receptor signaling protein serine/threonine kinase activity  transforming growth factor beta-activated receptor activity  transforming growth factor beta-activated receptor activity  transforming growth factor beta-activated receptor activity  transforming growth factor beta-activated receptor activity  transforming growth factor beta receptor activity, type I  type II transforming growth factor beta receptor binding  type II transforming growth factor beta receptor binding  protein binding  ATP binding  plasma membrane  plasma membrane  tight junction  regulation of transcription, DNA-templated  regulation of transcription, DNA-templated  protein phosphorylation  apoptotic process  cell cycle arrest  signal transduction  transforming growth factor beta receptor signaling pathway  transforming growth factor beta receptor signaling pathway  transforming growth factor beta receptor signaling pathway  transforming growth factor beta receptor signaling pathway  heart development  positive regulation of cell proliferation  germ cell migration  post-embryonic development  anterior/posterior pattern specification  positive regulation of pathway-restricted SMAD protein phosphorylation  peptidyl-serine phosphorylation  peptidyl-threonine phosphorylation  growth factor binding  signal transduction by phosphorylation  collagen fibril organization  positive regulation of cell growth  negative regulation of transforming growth factor beta receptor signaling pathway  regulation of protein ubiquitination  negative regulation of chondrocyte differentiation  wound healing  extracellular structure organization  negative regulation of apoptotic process  receptor complex  regulation of protein binding  endothelial cell migration  positive regulation of transcription, DNA-templated  SMAD binding  SMAD binding  metal ion binding  thymus development  neuron fate commitment  embryonic cranial skeleton morphogenesis  skeletal system morphogenesis  mesenchymal cell differentiation  artery morphogenesis  cell motility  transforming growth factor beta binding  transforming growth factor beta binding  transforming growth factor beta binding  positive regulation of cellular component movement  positive regulation of filopodium assembly  positive regulation of protein kinase B signaling  parathyroid gland development  palate development  pharyngeal system development  pathway-restricted SMAD protein phosphorylation  positive regulation of SMAD protein import into nucleus  transforming growth factor beta receptor homodimeric complex  I-SMAD binding  response to cholesterol  cellular response to transforming growth factor beta stimulus  positive regulation of apoptotic signaling pathway  negative regulation of extrinsic apoptotic signaling pathway  
Pathways : BIOCARTARole of Tob in T-cell activation [Genes]    MAPKinase Signaling Pathway [Genes]    NFkB activation by Nontypeable Hemophilus influenzae [Genes]    CTCF: First Multivalent Nuclear Factor [Genes]    TGF beta signaling pathway [Genes]    ALK in cardiac myocytes [Genes]    Function of SLRP in Bone: An Integrated View [Genes]    p38 MAPK Signaling Pathway [Genes]   
Pathways : KEGGMAPK signaling pathway    Cytokine-cytokine receptor interaction    FoxO signaling pathway    Endocytosis    TGF-beta signaling pathway    Osteoclast differentiation    Hippo signaling pathway    Adherens junction    Chagas disease (American trypanosomiasis)    Hepatitis B    HTLV-I infection    Pathways in cancer    Colorectal cancer    Pancreatic cancer    Chronic myeloid leukemia   
Protein Interaction DatabaseTGFBR1
DoCM (Curated mutations)TGFBR1
Wikipedia pathwaysTGFBR1
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerTGFBR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TGFBR1
dbVarTGFBR1
ClinVarTGFBR1
1000_GenomesTGFBR1 
Exome Variant ServerTGFBR1
SNP (GeneSNP Utah)TGFBR1
SNP : HGBaseTGFBR1
Genetic variants : HAPMAPTGFBR1
Genomic VariantsTGFBR1  TGFBR1 [DGVbeta]
Mutations
ICGC Data PortalENSG00000106799 
Somatic Mutations in Cancer : COSMICTGFBR1 
CONAN: Copy Number AnalysisTGFBR1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)9:101867412-101916473
Mutations and Diseases : HGMDTGFBR1
OMIM132800    190181    609192   
MedgenTGFBR1
NextProtP36897 [Medical]
GENETestsTGFBR1
Disease Genetic AssociationTGFBR1
Huge Navigator TGFBR1 [HugePedia]  TGFBR1 [HugeCancerGEM]
snp3D : Map Gene to Disease7046
DGIdb (Drug Gene Interaction db)TGFBR1
General knowledge
Homologs : HomoloGeneTGFBR1
Homology/Alignments : Family Browser (UCSC)TGFBR1
Phylogenetic Trees/Animal Genes : TreeFamTGFBR1
Chemical/Protein Interactions : CTD7046
Chemical/Pharm GKB GenePA36485
Clinical trialTGFBR1
Cancer Resource (Charite)ENSG00000106799
Other databases
Probes
Litterature
PubMed368 Pubmed reference(s) in Entrez
CoreMineTGFBR1
GoPubMedTGFBR1
iHOPTGFBR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sun Dec 21 01:54:01 CET 2014

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