Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TGFBR3L (transforming growth factor beta receptor 3 like)

Identity

Alias_namestransforming growth factor
Other aliasTGFR-3L
HGNC (Hugo) TGFBR3L
LocusID (NCBI) 100507588
Atlas_Id 52771
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 7916147 and ends at 7919095 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TGFBR3L   44152
Cards
Entrez_Gene (NCBI)TGFBR3L  100507588  transforming growth factor beta receptor 3 like
AliasesTGFR-3L
GeneCards (Weizmann)TGFBR3L
Ensembl hg19 (Hinxton)ENSG00000260001 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260001 [Gene_View]  chr19:7916147-7919095 [Contig_View]  TGFBR3L [Vega]
ICGC DataPortalENSG00000260001
TCGA cBioPortalTGFBR3L
AceView (NCBI)TGFBR3L
Genatlas (Paris)TGFBR3L
WikiGenes100507588
SOURCE (Princeton)TGFBR3L
Genetics Home Reference (NIH)TGFBR3L
Genomic and cartography
GoldenPath hg38 (UCSC)TGFBR3L  -     chr19:7916147-7919095 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TGFBR3L  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblTGFBR3L - 19p13.2 [CytoView hg19]  TGFBR3L - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBITGFBR3L [Mapview hg19]  TGFBR3L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI536712 AI692730 BG752983 DR033794
RefSeq transcript (Entrez)NM_001195259
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TGFBR3L
Cluster EST : UnigeneHs.646773 [ NCBI ]
CGAP (NCI)Hs.646773
Alternative Splicing GalleryENSG00000260001
Gene ExpressionTGFBR3L [ NCBI-GEO ]   TGFBR3L [ EBI - ARRAY_EXPRESS ]   TGFBR3L [ SEEK ]   TGFBR3L [ MEM ]
Gene Expression Viewer (FireBrowse)TGFBR3L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100507588
GTEX Portal (Tissue expression)TGFBR3L
Protein : pattern, domain, 3D structure
UniProt/SwissProtH3BV60   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtH3BV60  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProH3BV60
Splice isoforms : SwissVarH3BV60
PhosPhoSitePlusH3BV60
Domains : Interpro (EBI)ZP_dom   
Domain families : Pfam (Sanger)Zona_pellucida (PF00100)   
Domain families : Pfam (NCBI)pfam00100   
Conserved Domain (NCBI)TGFBR3L
DMDM Disease mutations100507588
Blocks (Seattle)TGFBR3L
SuperfamilyH3BV60
Human Protein AtlasENSG00000260001
Peptide AtlasH3BV60
Protein Interaction databases
DIP (DOE-UCLA)H3BV60
IntAct (EBI)H3BV60
FunCoupENSG00000260001
BioGRIDTGFBR3L
STRING (EMBL)TGFBR3L
ZODIACTGFBR3L
Ontologies - Pathways
QuickGOH3BV60
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTGFBR3L
Atlas of Cancer Signalling NetworkTGFBR3L
Wikipedia pathwaysTGFBR3L
Orthology - Evolution
OrthoDB100507588
GeneTree (enSembl)ENSG00000260001
Phylogenetic Trees/Animal Genes : TreeFamTGFBR3L
HOVERGENH3BV60
HOGENOMH3BV60
Homologs : HomoloGeneTGFBR3L
Homology/Alignments : Family Browser (UCSC)TGFBR3L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTGFBR3L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TGFBR3L
dbVarTGFBR3L
ClinVarTGFBR3L
1000_GenomesTGFBR3L 
Exome Variant ServerTGFBR3L
ExAC (Exome Aggregation Consortium)TGFBR3L (select the gene name)
Genetic variants : HAPMAP100507588
Genomic Variants (DGV)TGFBR3L [DGVbeta]
DECIPHERTGFBR3L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTGFBR3L 
Mutations
ICGC Data PortalTGFBR3L 
TCGA Data PortalTGFBR3L 
Broad Tumor PortalTGFBR3L
OASIS PortalTGFBR3L [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTGFBR3L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TGFBR3L
DgiDB (Drug Gene Interaction Database)TGFBR3L
DoCM (Curated mutations)TGFBR3L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TGFBR3L (select a term)
intoGenTGFBR3L
Cancer3DTGFBR3L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTGFBR3L
Genetic Testing Registry TGFBR3L
NextProtH3BV60 [Medical]
TSGene100507588
GENETestsTGFBR3L
Target ValidationTGFBR3L
Huge Navigator TGFBR3L [HugePedia]
snp3D : Map Gene to Disease100507588
BioCentury BCIQTGFBR3L
ClinGenTGFBR3L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507588
Chemical/Pharm GKB GenePA166049107
Clinical trialTGFBR3L
Miscellaneous
canSAR (ICR)TGFBR3L (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTGFBR3L
EVEXTGFBR3L
GoPubMedTGFBR3L
iHOPTGFBR3L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:59:12 CEST 2017

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