Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TGIF2LX (TGFB induced factor homeobox 2 like X-linked)

Identity

Alias (NCBI)TGIFLX
HGNC (Hugo) TGIF2LX
HGNC Previous nameTGFB-induced factor 2-like, X-linked
 TGFB-induced factor homeobox 2-like, X-linked
LocusID (NCBI) 90316
Atlas_Id 50929
Location Xq21.31  [Link to chromosome band Xq21]
Location_base_pair Starts at 89921908 and ends at 89922883 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TGIF2LX   18570
Cards
Entrez_Gene (NCBI)TGIF2LX    TGFB induced factor homeobox 2 like X-linked
AliasesTGIFLX
GeneCards (Weizmann)TGIF2LX
Ensembl hg19 (Hinxton)ENSG00000153779 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153779 [Gene_View]  ENSG00000153779 [Sequence]  chrX:89921908-89922883 [Contig_View]  TGIF2LX [Vega]
ICGC DataPortalENSG00000153779
TCGA cBioPortalTGIF2LX
AceView (NCBI)TGIF2LX
Genatlas (Paris)TGIF2LX
SOURCE (Princeton)TGIF2LX
Genetics Home Reference (NIH)TGIF2LX
Genomic and cartography
GoldenPath hg38 (UCSC)TGIF2LX  -     chrX:89921908-89922883 +  Xq21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TGIF2LX  -     Xq21.31   [Description]    (hg19-Feb_2009)
GoldenPathTGIF2LX - Xq21.31 [CytoView hg19]  TGIF2LX - Xq21.31 [CytoView hg38]
ImmunoBaseENSG00000153779
Genome Data Viewer NCBITGIF2LX [Mapview hg19]  
OMIM300411   
Gene and transcription
Genbank (Entrez)AF497480 BC029920 BC101144 BC101145 BC117398
RefSeq transcript (Entrez)NM_138960
Consensus coding sequences : CCDS (NCBI)TGIF2LX
Gene ExpressionTGIF2LX [ NCBI-GEO ]   TGIF2LX [ EBI - ARRAY_EXPRESS ]   TGIF2LX [ SEEK ]   TGIF2LX [ MEM ]
Gene Expression Viewer (FireBrowse)TGIF2LX [ Firebrowse - Broad ]
GenevisibleExpression of TGIF2LX in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90316
GTEX Portal (Tissue expression)TGIF2LX
Human Protein AtlasENSG00000153779-TGIF2LX [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUE1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IUE1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUE1
PhosPhoSitePlusQ8IUE1
Domaine pattern : Prosite (Expaxy)HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like_sf    Homeobox_dom    Homeobox_KN_domain   
Domain families : Pfam (Sanger)Homeobox_KN (PF05920)   
Domain families : Pfam (NCBI)pfam05920   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)TGIF2LX
PDB (RSDB)2DMN   
PDB Europe2DMN   
PDB (PDBSum)2DMN   
PDB (IMB)2DMN   
Structural Biology KnowledgeBase2DMN   
SCOP (Structural Classification of Proteins)2DMN   
CATH (Classification of proteins structures)2DMN   
SuperfamilyQ8IUE1
AlphaFold pdb e-kbQ8IUE1   
Human Protein Atlas [tissue]ENSG00000153779-TGIF2LX [tissue]
HPRD02328
Protein Interaction databases
DIP (DOE-UCLA)Q8IUE1
IntAct (EBI)Q8IUE1
BioGRIDTGIF2LX
STRING (EMBL)TGIF2LX
ZODIACTGIF2LX
Ontologies - Pathways
QuickGOQ8IUE1
Ontology : AmiGOchromatin  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  nucleus  regulation of transcription by RNA polymerase II  sequence-specific double-stranded DNA binding  
Ontology : EGO-EBIchromatin  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  nucleus  regulation of transcription by RNA polymerase II  sequence-specific double-stranded DNA binding  
NDEx NetworkTGIF2LX
Atlas of Cancer Signalling NetworkTGIF2LX
Wikipedia pathwaysTGIF2LX
Orthology - Evolution
OrthoDB90316
GeneTree (enSembl)ENSG00000153779
Phylogenetic Trees/Animal Genes : TreeFamTGIF2LX
Homologs : HomoloGeneTGIF2LX
Homology/Alignments : Family Browser (UCSC)TGIF2LX
Gene fusions - Rearrangements
Fusion : QuiverTGIF2LX
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTGIF2LX [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TGIF2LX
dbVarTGIF2LX
ClinVarTGIF2LX
MonarchTGIF2LX
1000_GenomesTGIF2LX 
Exome Variant ServerTGIF2LX
GNOMAD BrowserENSG00000153779
Varsome BrowserTGIF2LX
ACMGTGIF2LX variants
VarityQ8IUE1
Genomic Variants (DGV)TGIF2LX [DGVbeta]
DECIPHERTGIF2LX [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTGIF2LX 
Mutations
ICGC Data PortalTGIF2LX 
TCGA Data PortalTGIF2LX 
Broad Tumor PortalTGIF2LX
OASIS PortalTGIF2LX [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTGIF2LX  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTGIF2LX
Mutations and Diseases : HGMDTGIF2LX
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTGIF2LX
DgiDB (Drug Gene Interaction Database)TGIF2LX
DoCM (Curated mutations)TGIF2LX
CIViC (Clinical Interpretations of Variants in Cancer)TGIF2LX
Cancer3DTGIF2LX
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300411   
Orphanet
DisGeNETTGIF2LX
MedgenTGIF2LX
Genetic Testing Registry TGIF2LX
NextProtQ8IUE1 [Medical]
GENETestsTGIF2LX
Target ValidationTGIF2LX
Huge Navigator TGIF2LX [HugePedia]
ClinGenTGIF2LX
Clinical trials, drugs, therapy
MyCancerGenomeTGIF2LX
Protein Interactions : CTDTGIF2LX
Pharm GKB GenePA38582
PharosQ8IUE1
Clinical trialTGIF2LX
Miscellaneous
canSAR (ICR)TGIF2LX
HarmonizomeTGIF2LX
DataMed IndexTGIF2LX
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTGIF2LX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:34:56 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.