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TGIF2LX (TGFB induced factor homeobox 2 like, X-linked)

Identity

Alias_namesTGFB-induced factor 2-like, X-linked
TGFB-induced factor homeobox 2-like, X-linked
Other aliasTGIFLX
HGNC (Hugo) TGIF2LX
LocusID (NCBI) 90316
Atlas_Id 50929
Location Xq21.31  [Link to chromosome band Xq21]
Location_base_pair Starts at 89921941 and ends at 89922883 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TGIF2LX   18570
Cards
Entrez_Gene (NCBI)TGIF2LX  90316  TGFB induced factor homeobox 2 like, X-linked
AliasesTGIFLX
GeneCards (Weizmann)TGIF2LX
Ensembl hg19 (Hinxton)ENSG00000153779 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153779 [Gene_View]  chrX:89921941-89922883 [Contig_View]  TGIF2LX [Vega]
ICGC DataPortalENSG00000153779
TCGA cBioPortalTGIF2LX
AceView (NCBI)TGIF2LX
Genatlas (Paris)TGIF2LX
WikiGenes90316
SOURCE (Princeton)TGIF2LX
Genetics Home Reference (NIH)TGIF2LX
Genomic and cartography
GoldenPath hg38 (UCSC)TGIF2LX  -     chrX:89921941-89922883 +  Xq21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TGIF2LX  -     Xq21.31   [Description]    (hg19-Feb_2009)
EnsemblTGIF2LX - Xq21.31 [CytoView hg19]  TGIF2LX - Xq21.31 [CytoView hg38]
Mapping of homologs : NCBITGIF2LX [Mapview hg19]  TGIF2LX [Mapview hg38]
OMIM300411   
Gene and transcription
Genbank (Entrez)AF497480 BC029920 BC101144 BC101145 BC117398
RefSeq transcript (Entrez)NM_138960
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TGIF2LX
Cluster EST : UnigeneHs.592220 [ NCBI ]
CGAP (NCI)Hs.592220
Alternative Splicing GalleryENSG00000153779
Gene ExpressionTGIF2LX [ NCBI-GEO ]   TGIF2LX [ EBI - ARRAY_EXPRESS ]   TGIF2LX [ SEEK ]   TGIF2LX [ MEM ]
Gene Expression Viewer (FireBrowse)TGIF2LX [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90316
GTEX Portal (Tissue expression)TGIF2LX
Human Protein AtlasENSG00000153779-TGIF2LX [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUE1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IUE1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUE1
Splice isoforms : SwissVarQ8IUE1
PhosPhoSitePlusQ8IUE1
Domaine pattern : Prosite (Expaxy)HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_dom    Homeobox_KN_domain   
Domain families : Pfam (Sanger)Homeobox_KN (PF05920)   
Domain families : Pfam (NCBI)pfam05920   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)TGIF2LX
DMDM Disease mutations90316
Blocks (Seattle)TGIF2LX
PDB (SRS)2DMN   
PDB (PDBSum)2DMN   
PDB (IMB)2DMN   
PDB (RSDB)2DMN   
Structural Biology KnowledgeBase2DMN   
SCOP (Structural Classification of Proteins)2DMN   
CATH (Classification of proteins structures)2DMN   
SuperfamilyQ8IUE1
Human Protein Atlas [tissue]ENSG00000153779-TGIF2LX [tissue]
Peptide AtlasQ8IUE1
HPRD02328
IPIIPI00337398   IPI00941845   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUE1
IntAct (EBI)Q8IUE1
FunCoupENSG00000153779
BioGRIDTGIF2LX
STRING (EMBL)TGIF2LX
ZODIACTGIF2LX
Ontologies - Pathways
QuickGOQ8IUE1
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
NDEx NetworkTGIF2LX
Atlas of Cancer Signalling NetworkTGIF2LX
Wikipedia pathwaysTGIF2LX
Orthology - Evolution
OrthoDB90316
GeneTree (enSembl)ENSG00000153779
Phylogenetic Trees/Animal Genes : TreeFamTGIF2LX
HOVERGENQ8IUE1
HOGENOMQ8IUE1
Homologs : HomoloGeneTGIF2LX
Homology/Alignments : Family Browser (UCSC)TGIF2LX
Gene fusions - Rearrangements
Tumor Fusion PortalTGIF2LX
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTGIF2LX [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TGIF2LX
dbVarTGIF2LX
ClinVarTGIF2LX
1000_GenomesTGIF2LX 
Exome Variant ServerTGIF2LX
ExAC (Exome Aggregation Consortium)ENSG00000153779
GNOMAD BrowserENSG00000153779
Genetic variants : HAPMAP90316
Genomic Variants (DGV)TGIF2LX [DGVbeta]
DECIPHERTGIF2LX [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTGIF2LX 
Mutations
ICGC Data PortalTGIF2LX 
TCGA Data PortalTGIF2LX 
Broad Tumor PortalTGIF2LX
OASIS PortalTGIF2LX [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTGIF2LX  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTGIF2LX
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TGIF2LX
DgiDB (Drug Gene Interaction Database)TGIF2LX
DoCM (Curated mutations)TGIF2LX (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TGIF2LX (select a term)
intoGenTGIF2LX
Cancer3DTGIF2LX(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300411   
Orphanet
DisGeNETTGIF2LX
MedgenTGIF2LX
Genetic Testing Registry TGIF2LX
NextProtQ8IUE1 [Medical]
TSGene90316
GENETestsTGIF2LX
Target ValidationTGIF2LX
Huge Navigator TGIF2LX [HugePedia]
snp3D : Map Gene to Disease90316
BioCentury BCIQTGIF2LX
ClinGenTGIF2LX
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90316
Chemical/Pharm GKB GenePA38582
Clinical trialTGIF2LX
Miscellaneous
canSAR (ICR)TGIF2LX (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTGIF2LX
EVEXTGIF2LX
GoPubMedTGIF2LX
iHOPTGIF2LX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:38:18 CET 2017

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