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TGIF2LY (TGFB induced factor homeobox 2 like Y-linked)

Identity

Alias (NCBI)TGIFLY
HGNC (Hugo) TGIF2LY
HGNC Previous nameTGFB-induced factor 2-like, Y-linked
 TGFB-induced factor homeobox 2-like, Y-linked
LocusID (NCBI) 90655
Atlas_Id 50910
Location Yp11.2  [Link to chromosome band Yp11]
Location_base_pair Starts at 3579067 and ends at 3580041 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TGIF2LY   18569
Cards
Entrez_Gene (NCBI)TGIF2LY    TGFB induced factor homeobox 2 like Y-linked
AliasesTGIFLY
GeneCards (Weizmann)TGIF2LY
Ensembl hg19 (Hinxton)ENSG00000176679 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176679 [Gene_View]  ENSG00000176679 [Sequence]  chrY:3579067-3580041 [Contig_View]  TGIF2LY [Vega]
ICGC DataPortalENSG00000176679
TCGA cBioPortalTGIF2LY
AceView (NCBI)TGIF2LY
Genatlas (Paris)TGIF2LY
SOURCE (Princeton)TGIF2LY
Genetics Home Reference (NIH)TGIF2LY
Genomic and cartography
GoldenPath hg38 (UCSC)TGIF2LY  -     chrY:3579067-3580041 +  Yp11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TGIF2LY  -     Yp11.2   [Description]    (hg19-Feb_2009)
GoldenPathTGIF2LY - Yp11.2 [CytoView hg19]  TGIF2LY - Yp11.2 [CytoView hg38]
ImmunoBaseENSG00000176679
Genome Data Viewer NCBITGIF2LY [Mapview hg19]  
OMIM400025   
Gene and transcription
Genbank (Entrez)AF332223 AK292609 BC101143 BC101146 BC128604
RefSeq transcript (Entrez)NM_139214
Consensus coding sequences : CCDS (NCBI)TGIF2LY
Gene ExpressionTGIF2LY [ NCBI-GEO ]   TGIF2LY [ EBI - ARRAY_EXPRESS ]   TGIF2LY [ SEEK ]   TGIF2LY [ MEM ]
Gene Expression Viewer (FireBrowse)TGIF2LY [ Firebrowse - Broad ]
GenevisibleExpression of TGIF2LY in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90655
GTEX Portal (Tissue expression)TGIF2LY
Human Protein AtlasENSG00000176679-TGIF2LY [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUE0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IUE0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUE0
PhosPhoSitePlusQ8IUE0
Domaine pattern : Prosite (Expaxy)HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like_sf    Homeobox_dom    Homeobox_KN_domain   
Domain families : Pfam (Sanger)Homeobox_KN (PF05920)   
Domain families : Pfam (NCBI)pfam05920   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)TGIF2LY
SuperfamilyQ8IUE0
AlphaFold pdb e-kbQ8IUE0   
Human Protein Atlas [tissue]ENSG00000176679-TGIF2LY [tissue]
HPRD18512
Protein Interaction databases
DIP (DOE-UCLA)Q8IUE0
IntAct (EBI)Q8IUE0
BioGRIDTGIF2LY
STRING (EMBL)TGIF2LY
ZODIACTGIF2LY
Ontologies - Pathways
QuickGOQ8IUE0
Ontology : AmiGOchromatin  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  protein binding  nucleus  regulation of transcription by RNA polymerase II  sequence-specific double-stranded DNA binding  
Ontology : EGO-EBIchromatin  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  protein binding  nucleus  regulation of transcription by RNA polymerase II  sequence-specific double-stranded DNA binding  
NDEx NetworkTGIF2LY
Atlas of Cancer Signalling NetworkTGIF2LY
Wikipedia pathwaysTGIF2LY
Orthology - Evolution
OrthoDB90655
GeneTree (enSembl)ENSG00000176679
Phylogenetic Trees/Animal Genes : TreeFamTGIF2LY
Homologs : HomoloGeneTGIF2LY
Homology/Alignments : Family Browser (UCSC)TGIF2LY
Gene fusions - Rearrangements
Fusion : QuiverTGIF2LY
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTGIF2LY [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TGIF2LY
dbVarTGIF2LY
ClinVarTGIF2LY
MonarchTGIF2LY
1000_GenomesTGIF2LY 
Exome Variant ServerTGIF2LY
GNOMAD BrowserENSG00000176679
Varsome BrowserTGIF2LY
ACMGTGIF2LY variants
VarityQ8IUE0
Genomic Variants (DGV)TGIF2LY [DGVbeta]
DECIPHERTGIF2LY [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTGIF2LY 
Mutations
ICGC Data PortalTGIF2LY 
TCGA Data PortalTGIF2LY 
Broad Tumor PortalTGIF2LY
OASIS PortalTGIF2LY [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTGIF2LY  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTGIF2LY
Mutations and Diseases : HGMDTGIF2LY
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTGIF2LY
DgiDB (Drug Gene Interaction Database)TGIF2LY
DoCM (Curated mutations)TGIF2LY
CIViC (Clinical Interpretations of Variants in Cancer)TGIF2LY
Cancer3DTGIF2LY
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM400025   
Orphanet
DisGeNETTGIF2LY
MedgenTGIF2LY
Genetic Testing Registry TGIF2LY
NextProtQ8IUE0 [Medical]
GENETestsTGIF2LY
Target ValidationTGIF2LY
Huge Navigator TGIF2LY [HugePedia]
ClinGenTGIF2LY
Clinical trials, drugs, therapy
MyCancerGenomeTGIF2LY
Protein Interactions : CTDTGIF2LY
Pharm GKB GenePA38581
PharosQ8IUE0
Clinical trialTGIF2LY
Miscellaneous
canSAR (ICR)TGIF2LY
HarmonizomeTGIF2LY
DataMed IndexTGIF2LY
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTGIF2LY
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:34:56 CEST 2021

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