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TGIF2LY (TGFB induced factor homeobox 2 like, Y-linked)

Identity

Alias_namesTGFB-induced factor 2-like, Y-linked
TGFB-induced factor homeobox 2-like, Y-linked
Other aliasTGIFLY
HGNC (Hugo) TGIF2LY
LocusID (NCBI) 90655
Atlas_Id 50910
Location Yp11.2  [Link to chromosome band Yp11]
Location_base_pair Starts at 3579085 and ends at 3580041 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TGIF2LY   18569
Cards
Entrez_Gene (NCBI)TGIF2LY  90655  TGFB induced factor homeobox 2 like, Y-linked
AliasesTGIFLY
GeneCards (Weizmann)TGIF2LY
Ensembl hg19 (Hinxton)ENSG00000176679 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176679 [Gene_View]  chrY:3579085-3580041 [Contig_View]  TGIF2LY [Vega]
ICGC DataPortalENSG00000176679
TCGA cBioPortalTGIF2LY
AceView (NCBI)TGIF2LY
Genatlas (Paris)TGIF2LY
WikiGenes90655
SOURCE (Princeton)TGIF2LY
Genetics Home Reference (NIH)TGIF2LY
Genomic and cartography
GoldenPath hg38 (UCSC)TGIF2LY  -     chrY:3579085-3580041 +  Yp11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TGIF2LY  -     Yp11.2   [Description]    (hg19-Feb_2009)
EnsemblTGIF2LY - Yp11.2 [CytoView hg19]  TGIF2LY - Yp11.2 [CytoView hg38]
Mapping of homologs : NCBITGIF2LY [Mapview hg19]  TGIF2LY [Mapview hg38]
OMIM400025   
Gene and transcription
Genbank (Entrez)AF332223 AK292609 BC101143 BC101146 BC128604
RefSeq transcript (Entrez)NM_139214
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TGIF2LY
Cluster EST : UnigeneHs.112148 [ NCBI ]
CGAP (NCI)Hs.112148
Alternative Splicing GalleryENSG00000176679
Gene ExpressionTGIF2LY [ NCBI-GEO ]   TGIF2LY [ EBI - ARRAY_EXPRESS ]   TGIF2LY [ SEEK ]   TGIF2LY [ MEM ]
Gene Expression Viewer (FireBrowse)TGIF2LY [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90655
GTEX Portal (Tissue expression)TGIF2LY
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUE0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IUE0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUE0
Splice isoforms : SwissVarQ8IUE0
PhosPhoSitePlusQ8IUE0
Domaine pattern : Prosite (Expaxy)HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_dom    Homeobox_KN_domain   
Domain families : Pfam (Sanger)Homeobox_KN (PF05920)   
Domain families : Pfam (NCBI)pfam05920   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)TGIF2LY
DMDM Disease mutations90655
Blocks (Seattle)TGIF2LY
SuperfamilyQ8IUE0
Human Protein AtlasENSG00000176679
Peptide AtlasQ8IUE0
HPRD18512
IPIIPI00216726   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUE0
IntAct (EBI)Q8IUE0
FunCoupENSG00000176679
BioGRIDTGIF2LY
STRING (EMBL)TGIF2LY
ZODIACTGIF2LY
Ontologies - Pathways
QuickGOQ8IUE0
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
NDEx NetworkTGIF2LY
Atlas of Cancer Signalling NetworkTGIF2LY
Wikipedia pathwaysTGIF2LY
Orthology - Evolution
OrthoDB90655
GeneTree (enSembl)ENSG00000176679
Phylogenetic Trees/Animal Genes : TreeFamTGIF2LY
HOVERGENQ8IUE0
HOGENOMQ8IUE0
Homologs : HomoloGeneTGIF2LY
Homology/Alignments : Family Browser (UCSC)TGIF2LY
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTGIF2LY [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TGIF2LY
dbVarTGIF2LY
ClinVarTGIF2LY
1000_GenomesTGIF2LY 
Exome Variant ServerTGIF2LY
ExAC (Exome Aggregation Consortium)TGIF2LY (select the gene name)
Genetic variants : HAPMAP90655
Genomic Variants (DGV)TGIF2LY [DGVbeta]
DECIPHERTGIF2LY [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTGIF2LY 
Mutations
ICGC Data PortalTGIF2LY 
TCGA Data PortalTGIF2LY 
Broad Tumor PortalTGIF2LY
OASIS PortalTGIF2LY [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTGIF2LY  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTGIF2LY
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TGIF2LY
DgiDB (Drug Gene Interaction Database)TGIF2LY
DoCM (Curated mutations)TGIF2LY (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TGIF2LY (select a term)
intoGenTGIF2LY
Cancer3DTGIF2LY(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM400025   
Orphanet
MedgenTGIF2LY
Genetic Testing Registry TGIF2LY
NextProtQ8IUE0 [Medical]
TSGene90655
GENETestsTGIF2LY
Target ValidationTGIF2LY
Huge Navigator TGIF2LY [HugePedia]
snp3D : Map Gene to Disease90655
BioCentury BCIQTGIF2LY
ClinGenTGIF2LY
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90655
Chemical/Pharm GKB GenePA38581
Clinical trialTGIF2LY
Miscellaneous
canSAR (ICR)TGIF2LY (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTGIF2LY
EVEXTGIF2LY
GoPubMedTGIF2LY
iHOPTGIF2LY
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:34:52 CEST 2017

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