Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TGM1 (transglutaminase 1)

Identity

Alias_namesICR2
transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase)
Alias_symbol (synonym)TGASE
TGK
LI
LI1
Other aliasARCI1
KTG
HGNC (Hugo) TGM1
LocusID (NCBI) 7051
Atlas_Id 46325
Location 14q12  [Link to chromosome band 14q12]
Location_base_pair Starts at 24249114 and ends at 24263210 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Cancer prone implicated (Data extracted from papers in the Atlas) [ 1 ]
  Beckwith-Wiedemann syndrome


External links

Nomenclature
HGNC (Hugo)TGM1   11777
Cards
Entrez_Gene (NCBI)TGM1  7051  transglutaminase 1
AliasesARCI1; ICR2; KTG; LI; 
LI1; TGASE; TGK
GeneCards (Weizmann)TGM1
Ensembl hg19 (Hinxton)ENSG00000092295 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000092295 [Gene_View]  ENSG00000092295 [Sequence]  chr14:24249114-24263210 [Contig_View]  TGM1 [Vega]
ICGC DataPortalENSG00000092295
TCGA cBioPortalTGM1
AceView (NCBI)TGM1
Genatlas (Paris)TGM1
WikiGenes7051
SOURCE (Princeton)TGM1
Genetics Home Reference (NIH)TGM1
Genomic and cartography
GoldenPath hg38 (UCSC)TGM1  -     chr14:24249114-24263210 -  14q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TGM1  -     14q12   [Description]    (hg19-Feb_2009)
GoldenPathTGM1 - 14q12 [CytoView hg19]  TGM1 - 14q12 [CytoView hg38]
ImmunoBaseENSG00000092295
Mapping of homologs : NCBITGM1 [Mapview hg19]  TGM1 [Mapview hg38]
OMIM190195   242300   
Gene and transcription
Genbank (Entrez)AK291350 AK299436 AK301652 AK315819 AK315828
RefSeq transcript (Entrez)NM_000359
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TGM1
Alternative Splicing GalleryENSG00000092295
Gene ExpressionTGM1 [ NCBI-GEO ]   TGM1 [ EBI - ARRAY_EXPRESS ]   TGM1 [ SEEK ]   TGM1 [ MEM ]
Gene Expression Viewer (FireBrowse)TGM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)7051
GTEX Portal (Tissue expression)TGM1
Human Protein AtlasENSG00000092295-TGM1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TGM1
DMDM Disease mutations7051
Blocks (Seattle)TGM1
Human Protein Atlas [tissue]ENSG00000092295-TGM1 [tissue]
HPRD01824
IPIIPI00305622   IPI01014432   
Protein Interaction databases
FunCoupENSG00000092295
BioGRIDTGM1
STRING (EMBL)TGM1
ZODIACTGM1
Ontologies - Pathways
Huge Navigator TGM1 [HugePedia]
snp3D : Map Gene to Disease7051
BioCentury BCIQTGM1
ClinGenTGM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7051
Chemical/Pharm GKB GenePA36490
Clinical trialTGM1
Miscellaneous
canSAR (ICR)TGM1 (select the gene name)
DataMed IndexTGM1
Probes
Litterature
PubMed136 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTGM1
EVEXTGM1
GoPubMedTGM1
iHOPTGM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Feb 19 17:12:48 CET 2020

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