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TGM3 (transglutaminase 3)

Identity

Alias_namestransglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase)
Alias_symbol (synonym)TGE
Other aliasUHS2
HGNC (Hugo) TGM3
LocusID (NCBI) 7053
Atlas_Id 46285
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 2295967 and ends at 2341079 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
EPB41L1 (20q11.23) / TGM3 (20p13)VPS72 (1q21.3) / TGM3 (20p13)EPB41L1 20q11.23 / TGM3 20p13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]

Solid Tumors TT_t2020p13q11ID104590


External links

Nomenclature
HGNC (Hugo)TGM3   11779
Cards
Entrez_Gene (NCBI)TGM3  7053  transglutaminase 3
AliasesTGE; UHS2
GeneCards (Weizmann)TGM3
Ensembl hg19 (Hinxton)ENSG00000125780 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125780 [Gene_View]  ENSG00000125780 [Sequence]  chr20:2295967-2341079 [Contig_View]  TGM3 [Vega]
ICGC DataPortalENSG00000125780
TCGA cBioPortalTGM3
AceView (NCBI)TGM3
Genatlas (Paris)TGM3
WikiGenes7053
SOURCE (Princeton)TGM3
Genetics Home Reference (NIH)TGM3
Genomic and cartography
GoldenPath hg38 (UCSC)TGM3  -     chr20:2295967-2341079 +  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TGM3  -     20p13   [Description]    (hg19-Feb_2009)
GoldenPathTGM3 - 20p13 [CytoView hg19]  TGM3 - 20p13 [CytoView hg38]
ImmunoBaseENSG00000125780
Mapping of homologs : NCBITGM3 [Mapview hg19]  TGM3 [Mapview hg38]
OMIM600238   617251   
Gene and transcription
Genbank (Entrez)AI216028 AK290324 AK291351 AK298637 AK299447
RefSeq transcript (Entrez)NM_003245
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TGM3
Alternative Splicing GalleryENSG00000125780
Gene ExpressionTGM3 [ NCBI-GEO ]   TGM3 [ EBI - ARRAY_EXPRESS ]   TGM3 [ SEEK ]   TGM3 [ MEM ]
Gene Expression Viewer (FireBrowse)TGM3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)7053
GTEX Portal (Tissue expression)TGM3
Human Protein AtlasENSG00000125780-TGM3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TGM3
DMDM Disease mutations7053
Blocks (Seattle)TGM3
Human Protein Atlas [tissue]ENSG00000125780-TGM3 [tissue]
HPRD02584
IPIIPI00300376   IPI00910597   IPI00909882   
Protein Interaction databases
FunCoupENSG00000125780
BioGRIDTGM3
STRING (EMBL)TGM3
ZODIACTGM3
Ontologies - Pathways
Huge Navigator TGM3 [HugePedia]
snp3D : Map Gene to Disease7053
BioCentury BCIQTGM3
ClinGenTGM3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7053
Chemical/Pharm GKB GenePA36492
Clinical trialTGM3
Miscellaneous
canSAR (ICR)TGM3 (select the gene name)
DataMed IndexTGM3
Probes
Litterature
PubMed88 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTGM3
EVEXTGM3
GoPubMedTGM3
iHOPTGM3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 19 17:12:48 CET 2020

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