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TGM7 (transglutaminase 7)

Identity

Alias (NCBI)TGMZ
HGNC (Hugo) TGM7
HGNC Alias symbTGMZ
HGNC Alias nametransglutaminase Z
LocusID (NCBI) 116179
Atlas_Id 74662
Location 15q15.2  [Link to chromosome band 15q15]
Location_base_pair Starts at 43276271 and ends at 43302255 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TTBK2 (15q15.2) / TGM7 (15q15.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TGM7   30790
Cards
Entrez_Gene (NCBI)TGM7    transglutaminase 7
AliasesTGMZ
GeneCards (Weizmann)TGM7
Ensembl hg19 (Hinxton)ENSG00000159495 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159495 [Gene_View]  ENSG00000159495 [Sequence]  chr15:43276271-43302255 [Contig_View]  TGM7 [Vega]
ICGC DataPortalENSG00000159495
TCGA cBioPortalTGM7
AceView (NCBI)TGM7
Genatlas (Paris)TGM7
SOURCE (Princeton)TGM7
Genetics Home Reference (NIH)TGM7
Genomic and cartography
GoldenPath hg38 (UCSC)TGM7  -     chr15:43276271-43302255 -  15q15.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TGM7  -     15q15.2   [Description]    (hg19-Feb_2009)
GoldenPathTGM7 - 15q15.2 [CytoView hg19]  TGM7 - 15q15.2 [CytoView hg38]
ImmunoBaseENSG00000159495
Genome Data Viewer NCBITGM7 [Mapview hg19]  
OMIM606776   
Gene and transcription
Genbank (Entrez)AF363393 BX112796
RefSeq transcript (Entrez)NM_052955
Consensus coding sequences : CCDS (NCBI)TGM7
Gene ExpressionTGM7 [ NCBI-GEO ]   TGM7 [ EBI - ARRAY_EXPRESS ]   TGM7 [ SEEK ]   TGM7 [ MEM ]
Gene Expression Viewer (FireBrowse)TGM7 [ Firebrowse - Broad ]
GenevisibleExpression of TGM7 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116179
GTEX Portal (Tissue expression)TGM7
Human Protein AtlasENSG00000159495-TGM7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96PF1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96PF1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96PF1
Catalytic activity : Enzyme2.3.2.13 [ Enzyme-Expasy ]   2.3.2.132.3.2.13 [ IntEnz-EBI ]   2.3.2.13 [ BRENDA ]   2.3.2.13 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ96PF1
Domaine pattern : Prosite (Expaxy)TRANSGLUTAMINASES (PS00547)   
Domains : Interpro (EBI)Ig-like_fold    Ig_E-set    Papain-like_cys_pep_sf    Transglutaminase-like    Transglutaminase-like_sf    Transglutaminase_animal    Transglutaminase_AS    Transglutaminase_C    Transglutaminase_C_sf    Transglutaminase_N   
Domain families : Pfam (Sanger)Transglut_C (PF00927)    Transglut_core (PF01841)    Transglut_N (PF00868)   
Domain families : Pfam (NCBI)pfam00927    pfam01841    pfam00868   
Domain families : Smart (EMBL)TGc (SM00460)  
Conserved Domain (NCBI)TGM7
SuperfamilyQ96PF1
AlphaFold pdb e-kbQ96PF1   
Human Protein Atlas [tissue]ENSG00000159495-TGM7 [tissue]
HPRD09485
Protein Interaction databases
DIP (DOE-UCLA)Q96PF1
IntAct (EBI)Q96PF1
BioGRIDTGM7
STRING (EMBL)TGM7
ZODIACTGM7
Ontologies - Pathways
QuickGOQ96PF1
Ontology : AmiGOprotein-glutamine gamma-glutamyltransferase activity  protein binding  peptide cross-linking  metal ion binding  
Ontology : EGO-EBIprotein-glutamine gamma-glutamyltransferase activity  protein binding  peptide cross-linking  metal ion binding  
NDEx NetworkTGM7
Atlas of Cancer Signalling NetworkTGM7
Wikipedia pathwaysTGM7
Orthology - Evolution
OrthoDB116179
GeneTree (enSembl)ENSG00000159495
Phylogenetic Trees/Animal Genes : TreeFamTGM7
Homologs : HomoloGeneTGM7
Homology/Alignments : Family Browser (UCSC)TGM7
Gene fusions - Rearrangements
Fusion : QuiverTGM7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTGM7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TGM7
dbVarTGM7
ClinVarTGM7
MonarchTGM7
1000_GenomesTGM7 
Exome Variant ServerTGM7
GNOMAD BrowserENSG00000159495
Varsome BrowserTGM7
ACMGTGM7 variants
VarityQ96PF1
Genomic Variants (DGV)TGM7 [DGVbeta]
DECIPHERTGM7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTGM7 
Mutations
ICGC Data PortalTGM7 
TCGA Data PortalTGM7 
Broad Tumor PortalTGM7
OASIS PortalTGM7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTGM7  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTGM7
Mutations and Diseases : HGMDTGM7
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTGM7
DgiDB (Drug Gene Interaction Database)TGM7
DoCM (Curated mutations)TGM7
CIViC (Clinical Interpretations of Variants in Cancer)TGM7
Cancer3DTGM7
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606776   
Orphanet
DisGeNETTGM7
MedgenTGM7
Genetic Testing Registry TGM7
NextProtQ96PF1 [Medical]
GENETestsTGM7
Target ValidationTGM7
Huge Navigator TGM7 [HugePedia]
ClinGenTGM7
Clinical trials, drugs, therapy
MyCancerGenomeTGM7
Protein Interactions : CTDTGM7
Pharm GKB GenePA134870048
PharosQ96PF1
Clinical trialTGM7
Miscellaneous
canSAR (ICR)TGM7
HarmonizomeTGM7
DataMed IndexTGM7
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTGM7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:24 CEST 2021

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