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TGM7 (transglutaminase 7)

Identity

Alias_symbol (synonym)TGMZ
Other alias
HGNC (Hugo) TGM7
LocusID (NCBI) 116179
Atlas_Id 74662
Location 15q15.2  [Link to chromosome band 15q15]
Location_base_pair Starts at 43276281 and ends at 43302255 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TTBK2 (15q15.2) / TGM7 (15q15.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TGM7   30790
Cards
Entrez_Gene (NCBI)TGM7  116179  transglutaminase 7
AliasesTGMZ
GeneCards (Weizmann)TGM7
Ensembl hg19 (Hinxton)ENSG00000159495 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159495 [Gene_View]  chr15:43276281-43302255 [Contig_View]  TGM7 [Vega]
ICGC DataPortalENSG00000159495
TCGA cBioPortalTGM7
AceView (NCBI)TGM7
Genatlas (Paris)TGM7
WikiGenes116179
SOURCE (Princeton)TGM7
Genetics Home Reference (NIH)TGM7
Genomic and cartography
GoldenPath hg38 (UCSC)TGM7  -     chr15:43276281-43302255 -  15q15.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TGM7  -     15q15.2   [Description]    (hg19-Feb_2009)
EnsemblTGM7 - 15q15.2 [CytoView hg19]  TGM7 - 15q15.2 [CytoView hg38]
Mapping of homologs : NCBITGM7 [Mapview hg19]  TGM7 [Mapview hg38]
OMIM606776   
Gene and transcription
Genbank (Entrez)AF363393 BC148502 BC153105 BX112796
RefSeq transcript (Entrez)NM_052955
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TGM7
Cluster EST : UnigeneHs.164661 [ NCBI ]
CGAP (NCI)Hs.164661
Alternative Splicing GalleryENSG00000159495
Gene ExpressionTGM7 [ NCBI-GEO ]   TGM7 [ EBI - ARRAY_EXPRESS ]   TGM7 [ SEEK ]   TGM7 [ MEM ]
Gene Expression Viewer (FireBrowse)TGM7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116179
GTEX Portal (Tissue expression)TGM7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96PF1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96PF1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96PF1
Splice isoforms : SwissVarQ96PF1
Catalytic activity : Enzyme2.3.2.13 [ Enzyme-Expasy ]   2.3.2.132.3.2.13 [ IntEnz-EBI ]   2.3.2.13 [ BRENDA ]   2.3.2.13 [ KEGG ]   
PhosPhoSitePlusQ96PF1
Domaine pattern : Prosite (Expaxy)TRANSGLUTAMINASES (PS00547)   
Domains : Interpro (EBI)Gln_gamma-glutamylTfrase_euk    Ig-like_fold    Ig_E-set    Transglutaminase-like    Transglutaminase_AS    Transglutaminase_C    Transglutaminase_N   
Domain families : Pfam (Sanger)Transglut_C (PF00927)    Transglut_core (PF01841)    Transglut_N (PF00868)   
Domain families : Pfam (NCBI)pfam00927    pfam01841    pfam00868   
Domain families : Smart (EMBL)TGc (SM00460)  
Conserved Domain (NCBI)TGM7
DMDM Disease mutations116179
Blocks (Seattle)TGM7
SuperfamilyQ96PF1
Human Protein AtlasENSG00000159495
Peptide AtlasQ96PF1
HPRD09485
IPIIPI00044409   
Protein Interaction databases
DIP (DOE-UCLA)Q96PF1
IntAct (EBI)Q96PF1
FunCoupENSG00000159495
BioGRIDTGM7
STRING (EMBL)TGM7
ZODIACTGM7
Ontologies - Pathways
QuickGOQ96PF1
Ontology : AmiGOprotein-glutamine gamma-glutamyltransferase activity  peptide cross-linking  metal ion binding  
Ontology : EGO-EBIprotein-glutamine gamma-glutamyltransferase activity  peptide cross-linking  metal ion binding  
NDEx NetworkTGM7
Atlas of Cancer Signalling NetworkTGM7
Wikipedia pathwaysTGM7
Orthology - Evolution
OrthoDB116179
GeneTree (enSembl)ENSG00000159495
Phylogenetic Trees/Animal Genes : TreeFamTGM7
HOVERGENQ96PF1
HOGENOMQ96PF1
Homologs : HomoloGeneTGM7
Homology/Alignments : Family Browser (UCSC)TGM7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTGM7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TGM7
dbVarTGM7
ClinVarTGM7
1000_GenomesTGM7 
Exome Variant ServerTGM7
ExAC (Exome Aggregation Consortium)TGM7 (select the gene name)
Genetic variants : HAPMAP116179
Genomic Variants (DGV)TGM7 [DGVbeta]
DECIPHERTGM7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTGM7 
Mutations
ICGC Data PortalTGM7 
TCGA Data PortalTGM7 
Broad Tumor PortalTGM7
OASIS PortalTGM7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTGM7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTGM7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TGM7
DgiDB (Drug Gene Interaction Database)TGM7
DoCM (Curated mutations)TGM7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TGM7 (select a term)
intoGenTGM7
Cancer3DTGM7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606776   
Orphanet
MedgenTGM7
Genetic Testing Registry TGM7
NextProtQ96PF1 [Medical]
TSGene116179
GENETestsTGM7
Target ValidationTGM7
Huge Navigator TGM7 [HugePedia]
snp3D : Map Gene to Disease116179
BioCentury BCIQTGM7
ClinGenTGM7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116179
Chemical/Pharm GKB GenePA134870048
Clinical trialTGM7
Miscellaneous
canSAR (ICR)TGM7 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTGM7
EVEXTGM7
GoPubMedTGM7
iHOPTGM7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:45:23 CEST 2017

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