Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TGOLN2 (trans-golgi network protein 2)

Identity

Alias_symbol (synonym)TGN51
TGN46
TGN48
TGN38
TTGN2
Other alias
HGNC (Hugo) TGOLN2
LocusID (NCBI) 10618
Atlas_Id 74663
Location 2p11.2  [Link to chromosome band 2p11]
Location_base_pair Starts at 85318018 and ends at 85328296 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FADS1 (11q12.2) / TGOLN2 (2p11.2)GTSF1 (12q13.13) / TGOLN2 (2p11.2)NAV1 (1q32.1) / TGOLN2 (2p11.2)
NKIRAS1 (3p24.2) / TGOLN2 (2p11.2)NUMB (14q24.2) / TGOLN2 (2p11.2)PRRC2C (1q24.3) / TGOLN2 (2p11.2)
RAP1GAP2 (17p13.3) / TGOLN2 (2p11.2)TGOLN2 (2p11.2) / AZGP1 (7q22.1)TGOLN2 (2p11.2) / CARD19 (9q22.31)
TGOLN2 (2p11.2) / COPA (1q23.2)TGOLN2 (2p11.2) / FOXP1 (3p13)TGOLN2 (2p11.2) / KYNU (2q22.2)
TGOLN2 (2p11.2) / PSME2 (14q12)TGOLN2 (2p11.2) / TGOLN2 (2p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TGOLN2   15450
Cards
Entrez_Gene (NCBI)TGOLN2  10618  trans-golgi network protein 2
AliasesTGN38; TGN46; TGN48; TGN51; 
TTGN2
GeneCards (Weizmann)TGOLN2
Ensembl hg19 (Hinxton)ENSG00000152291 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152291 [Gene_View]  chr2:85318018-85328296 [Contig_View]  TGOLN2 [Vega]
ICGC DataPortalENSG00000152291
TCGA cBioPortalTGOLN2
AceView (NCBI)TGOLN2
Genatlas (Paris)TGOLN2
WikiGenes10618
SOURCE (Princeton)TGOLN2
Genetics Home Reference (NIH)TGOLN2
Genomic and cartography
GoldenPath hg38 (UCSC)TGOLN2  -     chr2:85318018-85328296 -  2p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TGOLN2  -     2p11.2   [Description]    (hg19-Feb_2009)
EnsemblTGOLN2 - 2p11.2 [CytoView hg19]  TGOLN2 - 2p11.2 [CytoView hg38]
Mapping of homologs : NCBITGOLN2 [Mapview hg19]  TGOLN2 [Mapview hg38]
OMIM603062   
Gene and transcription
Genbank (Entrez)AA723637 AA814306 AF027515 AF027516 AK025557
RefSeq transcript (Entrez)NM_001206840 NM_001206841 NM_001206844 NM_006464
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TGOLN2
Cluster EST : UnigeneHs.593382 [ NCBI ]
CGAP (NCI)Hs.593382
Alternative Splicing GalleryENSG00000152291
Gene ExpressionTGOLN2 [ NCBI-GEO ]   TGOLN2 [ EBI - ARRAY_EXPRESS ]   TGOLN2 [ SEEK ]   TGOLN2 [ MEM ]
Gene Expression Viewer (FireBrowse)TGOLN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10618
GTEX Portal (Tissue expression)TGOLN2
Human Protein AtlasENSG00000152291-TGOLN2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43493   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43493  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43493
Splice isoforms : SwissVarO43493
PhosPhoSitePlusO43493
Domains : Interpro (EBI)TGN38   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TGOLN2
DMDM Disease mutations10618
Blocks (Seattle)TGOLN2
SuperfamilyO43493
Human Protein Atlas [tissue]ENSG00000152291-TGOLN2 [tissue]
Peptide AtlasO43493
HPRD04343
IPIIPI00012545   IPI00297543   IPI00219049   IPI00855725   IPI00855872   IPI00445166   IPI01026473   IPI01026516   
Protein Interaction databases
DIP (DOE-UCLA)O43493
IntAct (EBI)O43493
FunCoupENSG00000152291
BioGRIDTGOLN2
STRING (EMBL)TGOLN2
ZODIACTGOLN2
Ontologies - Pathways
QuickGOO43493
Ontology : AmiGOprotein binding  nucleoplasm  endosome  Golgi apparatus  trans-Golgi network  cytosol  plasma membrane  Golgi to endosome transport  integral component of membrane  transport vesicle  trans-Golgi network transport vesicle  clathrin-coated vesicle membrane  membrane organization  
Ontology : EGO-EBIprotein binding  nucleoplasm  endosome  Golgi apparatus  trans-Golgi network  cytosol  plasma membrane  Golgi to endosome transport  integral component of membrane  transport vesicle  trans-Golgi network transport vesicle  clathrin-coated vesicle membrane  membrane organization  
NDEx NetworkTGOLN2
Atlas of Cancer Signalling NetworkTGOLN2
Wikipedia pathwaysTGOLN2
Orthology - Evolution
OrthoDB10618
GeneTree (enSembl)ENSG00000152291
Phylogenetic Trees/Animal Genes : TreeFamTGOLN2
HOVERGENO43493
HOGENOMO43493
Homologs : HomoloGeneTGOLN2
Homology/Alignments : Family Browser (UCSC)TGOLN2
Gene fusions - Rearrangements
Fusion: Tumor Portal TGOLN2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTGOLN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TGOLN2
dbVarTGOLN2
ClinVarTGOLN2
1000_GenomesTGOLN2 
Exome Variant ServerTGOLN2
ExAC (Exome Aggregation Consortium)ENSG00000152291
GNOMAD BrowserENSG00000152291
Genetic variants : HAPMAP10618
Genomic Variants (DGV)TGOLN2 [DGVbeta]
DECIPHERTGOLN2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTGOLN2 
Mutations
ICGC Data PortalTGOLN2 
TCGA Data PortalTGOLN2 
Broad Tumor PortalTGOLN2
OASIS PortalTGOLN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTGOLN2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTGOLN2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TGOLN2
DgiDB (Drug Gene Interaction Database)TGOLN2
DoCM (Curated mutations)TGOLN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TGOLN2 (select a term)
intoGenTGOLN2
Cancer3DTGOLN2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603062   
Orphanet
MedgenTGOLN2
Genetic Testing Registry TGOLN2
NextProtO43493 [Medical]
TSGene10618
GENETestsTGOLN2
Target ValidationTGOLN2
Huge Navigator TGOLN2 [HugePedia]
snp3D : Map Gene to Disease10618
BioCentury BCIQTGOLN2
ClinGenTGOLN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10618
Chemical/Pharm GKB GenePA37959
Clinical trialTGOLN2
Miscellaneous
canSAR (ICR)TGOLN2 (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTGOLN2
EVEXTGOLN2
GoPubMedTGOLN2
iHOPTGOLN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:32:16 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.