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THAP10 (THAP domain containing 10)

Identity

Other alias-
HGNC (Hugo) THAP10
LocusID (NCBI) 56906
Atlas_Id 74664
Location 15q23  [Link to chromosome band 15q23]
Location_base_pair Starts at 71173681 and ends at 71184772 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TLE3 (15q23) / THAP10 (15q23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)THAP10   23193
Cards
Entrez_Gene (NCBI)THAP10  56906  THAP domain containing 10
Aliases
GeneCards (Weizmann)THAP10
Ensembl hg19 (Hinxton)ENSG00000129028 [Gene_View]  chr15:71173681-71184772 [Contig_View]  THAP10 [Vega]
Ensembl hg38 (Hinxton)ENSG00000129028 [Gene_View]  chr15:71173681-71184772 [Contig_View]  THAP10 [Vega]
ICGC DataPortalENSG00000129028
TCGA cBioPortalTHAP10
AceView (NCBI)THAP10
Genatlas (Paris)THAP10
WikiGenes56906
SOURCE (Princeton)THAP10
Genetics Home Reference (NIH)THAP10
Genomic and cartography
GoldenPath hg19 (UCSC)THAP10  -     chr15:71173681-71184772 -  15q23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)THAP10  -     15q23   [Description]    (hg38-Dec_2013)
EnsemblTHAP10 - 15q23 [CytoView hg19]  THAP10 - 15q23 [CytoView hg38]
Mapping of homologs : NCBITHAP10 [Mapview hg19]  THAP10 [Mapview hg38]
OMIM612538   
Gene and transcription
Genbank (Entrez)AK313472 AL360202 BC027857 BC072414 DA272000
RefSeq transcript (Entrez)NM_020147
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)THAP10
Cluster EST : UnigeneHs.591123 [ NCBI ]
CGAP (NCI)Hs.591123
Alternative Splicing GalleryENSG00000129028
Gene ExpressionTHAP10 [ NCBI-GEO ]   THAP10 [ EBI - ARRAY_EXPRESS ]   THAP10 [ SEEK ]   THAP10 [ MEM ]
Gene Expression Viewer (FireBrowse)THAP10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56906
GTEX Portal (Tissue expression)THAP10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2Z0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2Z0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2Z0
Splice isoforms : SwissVarQ9P2Z0
PhosPhoSitePlusQ9P2Z0
Domaine pattern : Prosite (Expaxy)ZF_THAP (PS50950)   
Domains : Interpro (EBI)Znf_C2CH   
Domain families : Pfam (Sanger)THAP (PF05485)   
Domain families : Pfam (NCBI)pfam05485   
Domain families : Smart (EMBL)DM3 (SM00692)  THAP (SM00980)  
Conserved Domain (NCBI)THAP10
DMDM Disease mutations56906
Blocks (Seattle)THAP10
SuperfamilyQ9P2Z0
Human Protein AtlasENSG00000129028
Peptide AtlasQ9P2Z0
HPRD15497
IPIIPI00024542   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2Z0
IntAct (EBI)Q9P2Z0
FunCoupENSG00000129028
BioGRIDTHAP10
STRING (EMBL)THAP10
ZODIACTHAP10
Ontologies - Pathways
QuickGOQ9P2Z0
Ontology : AmiGODNA binding  protein binding  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  metal ion binding  
NDEx NetworkTHAP10
Atlas of Cancer Signalling NetworkTHAP10
Wikipedia pathwaysTHAP10
Orthology - Evolution
OrthoDB56906
GeneTree (enSembl)ENSG00000129028
Phylogenetic Trees/Animal Genes : TreeFamTHAP10
HOVERGENQ9P2Z0
HOGENOMQ9P2Z0
Homologs : HomoloGeneTHAP10
Homology/Alignments : Family Browser (UCSC)THAP10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTHAP10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)THAP10
dbVarTHAP10
ClinVarTHAP10
1000_GenomesTHAP10 
Exome Variant ServerTHAP10
ExAC (Exome Aggregation Consortium)THAP10 (select the gene name)
Genetic variants : HAPMAP56906
Genomic Variants (DGV)THAP10 [DGVbeta]
DECIPHER (Syndromes)15:71173681-71184772  ENSG00000129028
CONAN: Copy Number AnalysisTHAP10 
Mutations
ICGC Data PortalTHAP10 
TCGA Data PortalTHAP10 
Broad Tumor PortalTHAP10
OASIS PortalTHAP10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTHAP10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTHAP10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch THAP10
DgiDB (Drug Gene Interaction Database)THAP10
DoCM (Curated mutations)THAP10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)THAP10 (select a term)
intoGenTHAP10
Cancer3DTHAP10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612538   
Orphanet
MedgenTHAP10
Genetic Testing Registry THAP10
NextProtQ9P2Z0 [Medical]
TSGene56906
GENETestsTHAP10
Huge Navigator THAP10 [HugePedia]
snp3D : Map Gene to Disease56906
BioCentury BCIQTHAP10
ClinGenTHAP10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56906
Chemical/Pharm GKB GenePA134988462
Clinical trialTHAP10
Miscellaneous
canSAR (ICR)THAP10 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTHAP10
EVEXTHAP10
GoPubMedTHAP10
iHOPTHAP10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:47:59 CET 2017

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