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THAP11 (THAP domain containing 11)

Identity

Alias (NCBI)CTG-B43a
CTG-B45d
HRIHFB2206
RONIN
HGNC (Hugo) THAP11
HGNC Alias symbHRIHFB2206
CTG-B45d
CTG-B43a
RONIN
LocusID (NCBI) 57215
Atlas_Id 52767
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 67842320 and ends at 67844195 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)THAP11   23194
Cards
Entrez_Gene (NCBI)THAP11    THAP domain containing 11
AliasesCTG-B43a; CTG-B45d; HRIHFB2206; RONIN
GeneCards (Weizmann)THAP11
Ensembl hg19 (Hinxton)ENSG00000168286 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168286 [Gene_View]  ENSG00000168286 [Sequence]  chr16:67842320-67844195 [Contig_View]  THAP11 [Vega]
ICGC DataPortalENSG00000168286
TCGA cBioPortalTHAP11
AceView (NCBI)THAP11
Genatlas (Paris)THAP11
SOURCE (Princeton)THAP11
Genetics Home Reference (NIH)THAP11
Genomic and cartography
GoldenPath hg38 (UCSC)THAP11  -     chr16:67842320-67844195 +  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)THAP11  -     16q22.1   [Description]    (hg19-Feb_2009)
GoldenPathTHAP11 - 16q22.1 [CytoView hg19]  THAP11 - 16q22.1 [CytoView hg38]
ImmunoBaseENSG00000168286
Genome Data Viewer NCBITHAP11 [Mapview hg19]  
OMIM609119   
Gene and transcription
Genbank (Entrez)AB015338 AK289367 BC012182 BI261822 BQ898449
RefSeq transcript (Entrez)NM_020457
Consensus coding sequences : CCDS (NCBI)THAP11
Gene ExpressionTHAP11 [ NCBI-GEO ]   THAP11 [ EBI - ARRAY_EXPRESS ]   THAP11 [ SEEK ]   THAP11 [ MEM ]
Gene Expression Viewer (FireBrowse)THAP11 [ Firebrowse - Broad ]
GenevisibleExpression of THAP11 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57215
GTEX Portal (Tissue expression)THAP11
Human Protein AtlasENSG00000168286-THAP11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96EK4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96EK4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96EK4
PhosPhoSitePlusQ96EK4
Domaine pattern : Prosite (Expaxy)ZF_THAP (PS50950)   
Domains : Interpro (EBI)THAP_Znf    THAP_Znf_sf   
Domain families : Pfam (Sanger)THAP (PF05485)   
Domain families : Pfam (NCBI)pfam05485   
Domain families : Smart (EMBL)DM3 (SM00692)  THAP (SM00980)  
Conserved Domain (NCBI)THAP11
PDB (RSDB)2LAU    5AJS   
PDB Europe2LAU    5AJS   
PDB (PDBSum)2LAU    5AJS   
PDB (IMB)2LAU    5AJS   
Structural Biology KnowledgeBase2LAU    5AJS   
SCOP (Structural Classification of Proteins)2LAU    5AJS   
CATH (Classification of proteins structures)2LAU    5AJS   
SuperfamilyQ96EK4
AlphaFold pdb e-kbQ96EK4   
Human Protein Atlas [tissue]ENSG00000168286-THAP11 [tissue]
HPRD11629
Protein Interaction databases
DIP (DOE-UCLA)Q96EK4
IntAct (EBI)Q96EK4
BioGRIDTHAP11
STRING (EMBL)THAP11
ZODIACTHAP11
Ontologies - Pathways
QuickGOQ96EK4
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  chromatin  RNA polymerase II cis-regulatory region sequence-specific DNA binding  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription repressor activity, RNA polymerase II-specific  DNA binding  protein binding  nucleoplasm  nucleoplasm  cytosol  regulation of transcription by RNA polymerase II  zinc ion binding  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  chromatin  RNA polymerase II cis-regulatory region sequence-specific DNA binding  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription repressor activity, RNA polymerase II-specific  DNA binding  protein binding  nucleoplasm  nucleoplasm  cytosol  regulation of transcription by RNA polymerase II  zinc ion binding  
NDEx NetworkTHAP11
Atlas of Cancer Signalling NetworkTHAP11
Wikipedia pathwaysTHAP11
Orthology - Evolution
OrthoDB57215
GeneTree (enSembl)ENSG00000168286
Phylogenetic Trees/Animal Genes : TreeFamTHAP11
Homologs : HomoloGeneTHAP11
Homology/Alignments : Family Browser (UCSC)THAP11
Gene fusions - Rearrangements
Fusion : QuiverTHAP11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTHAP11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)THAP11
dbVarTHAP11
ClinVarTHAP11
MonarchTHAP11
1000_GenomesTHAP11 
Exome Variant ServerTHAP11
GNOMAD BrowserENSG00000168286
Varsome BrowserTHAP11
ACMGTHAP11 variants
VarityQ96EK4
Genomic Variants (DGV)THAP11 [DGVbeta]
DECIPHERTHAP11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTHAP11 
Mutations
ICGC Data PortalTHAP11 
TCGA Data PortalTHAP11 
Broad Tumor PortalTHAP11
OASIS PortalTHAP11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTHAP11  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTHAP11
Mutations and Diseases : HGMDTHAP11
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTHAP11
DgiDB (Drug Gene Interaction Database)THAP11
DoCM (Curated mutations)THAP11
CIViC (Clinical Interpretations of Variants in Cancer)THAP11
Cancer3DTHAP11
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609119   
Orphanet
DisGeNETTHAP11
MedgenTHAP11
Genetic Testing Registry THAP11
NextProtQ96EK4 [Medical]
GENETestsTHAP11
Target ValidationTHAP11
Huge Navigator THAP11 [HugePedia]
ClinGenTHAP11
Clinical trials, drugs, therapy
MyCancerGenomeTHAP11
Protein Interactions : CTDTHAP11
Pharm GKB GenePA134979842
PharosQ96EK4
Clinical trialTHAP11
Miscellaneous
canSAR (ICR)THAP11
HarmonizomeTHAP11
DataMed IndexTHAP11
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTHAP11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:34:58 CEST 2021

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