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THAP11 (THAP domain containing 11)

Identity

Alias_symbol (synonym)HRIHFB2206
CTG-B45d
CTG-B43a
Other aliasRONIN
HGNC (Hugo) THAP11
LocusID (NCBI) 57215
Atlas_Id 52767
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 67842310 and ends at 67844195 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)THAP11   23194
Cards
Entrez_Gene (NCBI)THAP11  57215  THAP domain containing 11
AliasesCTG-B43a; CTG-B45d; HRIHFB2206; RONIN
GeneCards (Weizmann)THAP11
Ensembl hg19 (Hinxton)ENSG00000168286 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168286 [Gene_View]  ENSG00000168286 [Sequence]  chr16:67842310-67844195 [Contig_View]  THAP11 [Vega]
ICGC DataPortalENSG00000168286
TCGA cBioPortalTHAP11
AceView (NCBI)THAP11
Genatlas (Paris)THAP11
WikiGenes57215
SOURCE (Princeton)THAP11
Genetics Home Reference (NIH)THAP11
Genomic and cartography
GoldenPath hg38 (UCSC)THAP11  -     chr16:67842310-67844195 +  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)THAP11  -     16q22.1   [Description]    (hg19-Feb_2009)
EnsemblTHAP11 - 16q22.1 [CytoView hg19]  THAP11 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBITHAP11 [Mapview hg19]  THAP11 [Mapview hg38]
OMIM609119   
Gene and transcription
Genbank (Entrez)AB015338 AK289367 BC012182 BI261822 BQ898449
RefSeq transcript (Entrez)NM_020457
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)THAP11
Cluster EST : UnigeneHs.632200 [ NCBI ]
CGAP (NCI)Hs.632200
Alternative Splicing GalleryENSG00000168286
Gene ExpressionTHAP11 [ NCBI-GEO ]   THAP11 [ EBI - ARRAY_EXPRESS ]   THAP11 [ SEEK ]   THAP11 [ MEM ]
Gene Expression Viewer (FireBrowse)THAP11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57215
GTEX Portal (Tissue expression)THAP11
Human Protein AtlasENSG00000168286-THAP11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96EK4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96EK4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96EK4
Splice isoforms : SwissVarQ96EK4
PhosPhoSitePlusQ96EK4
Domaine pattern : Prosite (Expaxy)ZF_THAP (PS50950)   
Domains : Interpro (EBI)THAP_Znf    THAP_Znf_sf   
Domain families : Pfam (Sanger)THAP (PF05485)   
Domain families : Pfam (NCBI)pfam05485   
Domain families : Smart (EMBL)DM3 (SM00692)  THAP (SM00980)  
Conserved Domain (NCBI)THAP11
DMDM Disease mutations57215
Blocks (Seattle)THAP11
PDB (SRS)2LAU    5AJS   
PDB (PDBSum)2LAU    5AJS   
PDB (IMB)2LAU    5AJS   
PDB (RSDB)2LAU    5AJS   
Structural Biology KnowledgeBase2LAU    5AJS   
SCOP (Structural Classification of Proteins)2LAU    5AJS   
CATH (Classification of proteins structures)2LAU    5AJS   
SuperfamilyQ96EK4
Human Protein Atlas [tissue]ENSG00000168286-THAP11 [tissue]
Peptide AtlasQ96EK4
HPRD11629
IPIIPI00061523   
Protein Interaction databases
DIP (DOE-UCLA)Q96EK4
IntAct (EBI)Q96EK4
FunCoupENSG00000168286
BioGRIDTHAP11
STRING (EMBL)THAP11
ZODIACTHAP11
Ontologies - Pathways
QuickGOQ96EK4
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  RNA polymerase II proximal promoter sequence-specific DNA binding  RNA polymerase II proximal promoter sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  proximal promoter DNA-binding transcription repressor activity, RNA polymerase II-specific  proximal promoter DNA-binding transcription repressor activity, RNA polymerase II-specific  DNA binding  protein binding  nucleoplasm  nucleoplasm  cytoplasm  zinc ion binding  zinc ion binding  intercellular bridge  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  RNA polymerase II proximal promoter sequence-specific DNA binding  RNA polymerase II proximal promoter sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  proximal promoter DNA-binding transcription repressor activity, RNA polymerase II-specific  proximal promoter DNA-binding transcription repressor activity, RNA polymerase II-specific  DNA binding  protein binding  nucleoplasm  nucleoplasm  cytoplasm  zinc ion binding  zinc ion binding  intercellular bridge  
NDEx NetworkTHAP11
Atlas of Cancer Signalling NetworkTHAP11
Wikipedia pathwaysTHAP11
Orthology - Evolution
OrthoDB57215
GeneTree (enSembl)ENSG00000168286
Phylogenetic Trees/Animal Genes : TreeFamTHAP11
HOVERGENQ96EK4
HOGENOMQ96EK4
Homologs : HomoloGeneTHAP11
Homology/Alignments : Family Browser (UCSC)THAP11
Gene fusions - Rearrangements
Fusion : QuiverTHAP11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTHAP11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)THAP11
dbVarTHAP11
ClinVarTHAP11
1000_GenomesTHAP11 
Exome Variant ServerTHAP11
ExAC (Exome Aggregation Consortium)ENSG00000168286
GNOMAD BrowserENSG00000168286
Varsome BrowserTHAP11
Genetic variants : HAPMAP57215
Genomic Variants (DGV)THAP11 [DGVbeta]
DECIPHERTHAP11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTHAP11 
Mutations
ICGC Data PortalTHAP11 
TCGA Data PortalTHAP11 
Broad Tumor PortalTHAP11
OASIS PortalTHAP11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTHAP11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTHAP11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch THAP11
DgiDB (Drug Gene Interaction Database)THAP11
DoCM (Curated mutations)THAP11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)THAP11 (select a term)
intoGenTHAP11
Cancer3DTHAP11(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609119   
Orphanet
DisGeNETTHAP11
MedgenTHAP11
Genetic Testing Registry THAP11
NextProtQ96EK4 [Medical]
TSGene57215
GENETestsTHAP11
Target ValidationTHAP11
Huge Navigator THAP11 [HugePedia]
snp3D : Map Gene to Disease57215
BioCentury BCIQTHAP11
ClinGenTHAP11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57215
Chemical/Pharm GKB GenePA134979842
Clinical trialTHAP11
Miscellaneous
canSAR (ICR)THAP11 (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTHAP11
EVEXTHAP11
GoPubMedTHAP11
iHOPTHAP11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:44:50 CET 2018

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