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THAP2 (THAP domain containing 2)

Identity

Alias_namesTHAP domain containing, apoptosis associated protein 2
Alias_symbol (synonym)DKFZP564I0422
Other alias-
HGNC (Hugo) THAP2
LocusID (NCBI) 83591
Atlas_Id 74665
Location 12q21.1  [Link to chromosome band 12q21]
Location_base_pair Starts at 71663897 and ends at 71680648 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
THAP2 (12q21.1) / GRIP1 (12q14.3)TMTC3 (12q21.32) / THAP2 (12q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)THAP2   20854
Cards
Entrez_Gene (NCBI)THAP2  83591  THAP domain containing 2
Aliases
GeneCards (Weizmann)THAP2
Ensembl hg19 (Hinxton)ENSG00000173451 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173451 [Gene_View]  chr12:71663897-71680648 [Contig_View]  THAP2 [Vega]
ICGC DataPortalENSG00000173451
TCGA cBioPortalTHAP2
AceView (NCBI)THAP2
Genatlas (Paris)THAP2
WikiGenes83591
SOURCE (Princeton)THAP2
Genetics Home Reference (NIH)THAP2
Genomic and cartography
GoldenPath hg38 (UCSC)THAP2  -     chr12:71663897-71680648 +  12q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)THAP2  -     12q21.1   [Description]    (hg19-Feb_2009)
EnsemblTHAP2 - 12q21.1 [CytoView hg19]  THAP2 - 12q21.1 [CytoView hg38]
Mapping of homologs : NCBITHAP2 [Mapview hg19]  THAP2 [Mapview hg38]
OMIM612531   
Gene and transcription
Genbank (Entrez)AK313452 AL136607 AM393083 BC008358 BP371303
RefSeq transcript (Entrez)NM_031435
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)THAP2
Cluster EST : UnigeneHs.245798 [ NCBI ]
CGAP (NCI)Hs.245798
Alternative Splicing GalleryENSG00000173451
Gene ExpressionTHAP2 [ NCBI-GEO ]   THAP2 [ EBI - ARRAY_EXPRESS ]   THAP2 [ SEEK ]   THAP2 [ MEM ]
Gene Expression Viewer (FireBrowse)THAP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83591
GTEX Portal (Tissue expression)THAP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0W7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0W7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0W7
Splice isoforms : SwissVarQ9H0W7
PhosPhoSitePlusQ9H0W7
Domaine pattern : Prosite (Expaxy)ZF_THAP (PS50950)   
Domains : Interpro (EBI)THAP2    Znf_C2CH   
Domain families : Pfam (Sanger)THAP (PF05485)   
Domain families : Pfam (NCBI)pfam05485   
Domain families : Smart (EMBL)DM3 (SM00692)  THAP (SM00980)  
Conserved Domain (NCBI)THAP2
DMDM Disease mutations83591
Blocks (Seattle)THAP2
PDB (SRS)2D8R   
PDB (PDBSum)2D8R   
PDB (IMB)2D8R   
PDB (RSDB)2D8R   
Structural Biology KnowledgeBase2D8R   
SCOP (Structural Classification of Proteins)2D8R   
CATH (Classification of proteins structures)2D8R   
SuperfamilyQ9H0W7
Human Protein AtlasENSG00000173451
Peptide AtlasQ9H0W7
HPRD10896
IPIIPI00027774   IPI01022205   IPI01021425   IPI01021886   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0W7
IntAct (EBI)Q9H0W7
FunCoupENSG00000173451
BioGRIDTHAP2
STRING (EMBL)THAP2
ZODIACTHAP2
Ontologies - Pathways
QuickGOQ9H0W7
Ontology : AmiGODNA binding  nucleolus  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleolus  metal ion binding  
NDEx NetworkTHAP2
Atlas of Cancer Signalling NetworkTHAP2
Wikipedia pathwaysTHAP2
Orthology - Evolution
OrthoDB83591
GeneTree (enSembl)ENSG00000173451
Phylogenetic Trees/Animal Genes : TreeFamTHAP2
HOVERGENQ9H0W7
HOGENOMQ9H0W7
Homologs : HomoloGeneTHAP2
Homology/Alignments : Family Browser (UCSC)THAP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTHAP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)THAP2
dbVarTHAP2
ClinVarTHAP2
1000_GenomesTHAP2 
Exome Variant ServerTHAP2
ExAC (Exome Aggregation Consortium)THAP2 (select the gene name)
Genetic variants : HAPMAP83591
Genomic Variants (DGV)THAP2 [DGVbeta]
DECIPHERTHAP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTHAP2 
Mutations
ICGC Data PortalTHAP2 
TCGA Data PortalTHAP2 
Broad Tumor PortalTHAP2
OASIS PortalTHAP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTHAP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTHAP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch THAP2
DgiDB (Drug Gene Interaction Database)THAP2
DoCM (Curated mutations)THAP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)THAP2 (select a term)
intoGenTHAP2
Cancer3DTHAP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612531   
Orphanet
MedgenTHAP2
Genetic Testing Registry THAP2
NextProtQ9H0W7 [Medical]
TSGene83591
GENETestsTHAP2
Target ValidationTHAP2
Huge Navigator THAP2 [HugePedia]
snp3D : Map Gene to Disease83591
BioCentury BCIQTHAP2
ClinGenTHAP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83591
Chemical/Pharm GKB GenePA134886354
Clinical trialTHAP2
Miscellaneous
canSAR (ICR)THAP2 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTHAP2
EVEXTHAP2
GoPubMedTHAP2
iHOPTHAP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:22 CEST 2017

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