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THAP5 (THAP domain containing 5)

Identity

Alias_symbol (synonym)DKFZp313O1132
Other alias-
HGNC (Hugo) THAP5
LocusID (NCBI) 168451
Atlas_Id 52110
Location 7q31.1  [Link to chromosome band 7q31]
Location_base_pair Starts at 108562144 and ends at 108569768 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)THAP5   23188
Cards
Entrez_Gene (NCBI)THAP5  168451  THAP domain containing 5
Aliases
GeneCards (Weizmann)THAP5
Ensembl hg19 (Hinxton)ENSG00000177683 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177683 [Gene_View]  chr7:108562144-108569768 [Contig_View]  THAP5 [Vega]
ICGC DataPortalENSG00000177683
TCGA cBioPortalTHAP5
AceView (NCBI)THAP5
Genatlas (Paris)THAP5
WikiGenes168451
SOURCE (Princeton)THAP5
Genetics Home Reference (NIH)THAP5
Genomic and cartography
GoldenPath hg38 (UCSC)THAP5  -     chr7:108562144-108569768 -  7q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)THAP5  -     7q31.1   [Description]    (hg19-Feb_2009)
EnsemblTHAP5 - 7q31.1 [CytoView hg19]  THAP5 - 7q31.1 [CytoView hg38]
Mapping of homologs : NCBITHAP5 [Mapview hg19]  THAP5 [Mapview hg38]
OMIM612534   
Gene and transcription
Genbank (Entrez)AL833137 AW407519 BC016973 BC040353 BC053634
RefSeq transcript (Entrez)NM_001130475 NM_001287598 NM_001287599 NM_001287601 NM_182529
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)THAP5
Cluster EST : UnigeneHs.707689 [ NCBI ]
CGAP (NCI)Hs.707689
Alternative Splicing GalleryENSG00000177683
Gene ExpressionTHAP5 [ NCBI-GEO ]   THAP5 [ EBI - ARRAY_EXPRESS ]   THAP5 [ SEEK ]   THAP5 [ MEM ]
Gene Expression Viewer (FireBrowse)THAP5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)168451
GTEX Portal (Tissue expression)THAP5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z6K1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z6K1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z6K1
Splice isoforms : SwissVarQ7Z6K1
PhosPhoSitePlusQ7Z6K1
Domaine pattern : Prosite (Expaxy)ZF_THAP (PS50950)   
Domains : Interpro (EBI)Znf_C2CH   
Domain families : Pfam (Sanger)THAP (PF05485)   
Domain families : Pfam (NCBI)pfam05485   
Domain families : Smart (EMBL)DM3 (SM00692)  THAP (SM00980)  
Conserved Domain (NCBI)THAP5
DMDM Disease mutations168451
Blocks (Seattle)THAP5
SuperfamilyQ7Z6K1
Human Protein AtlasENSG00000177683
Peptide AtlasQ7Z6K1
HPRD15498
IPIIPI00293093   IPI00893020   IPI00927080   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z6K1
IntAct (EBI)Q7Z6K1
FunCoupENSG00000177683
BioGRIDTHAP5
STRING (EMBL)THAP5
ZODIACTHAP5
Ontologies - Pathways
QuickGOQ7Z6K1
Ontology : AmiGOprotease binding  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  cell cycle  negative regulation of cell cycle  metal ion binding  
Ontology : EGO-EBIprotease binding  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  cell cycle  negative regulation of cell cycle  metal ion binding  
NDEx NetworkTHAP5
Atlas of Cancer Signalling NetworkTHAP5
Wikipedia pathwaysTHAP5
Orthology - Evolution
OrthoDB168451
GeneTree (enSembl)ENSG00000177683
Phylogenetic Trees/Animal Genes : TreeFamTHAP5
HOVERGENQ7Z6K1
HOGENOMQ7Z6K1
Homologs : HomoloGeneTHAP5
Homology/Alignments : Family Browser (UCSC)THAP5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTHAP5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)THAP5
dbVarTHAP5
ClinVarTHAP5
1000_GenomesTHAP5 
Exome Variant ServerTHAP5
ExAC (Exome Aggregation Consortium)THAP5 (select the gene name)
Genetic variants : HAPMAP168451
Genomic Variants (DGV)THAP5 [DGVbeta]
DECIPHERTHAP5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTHAP5 
Mutations
ICGC Data PortalTHAP5 
TCGA Data PortalTHAP5 
Broad Tumor PortalTHAP5
OASIS PortalTHAP5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTHAP5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTHAP5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch THAP5
DgiDB (Drug Gene Interaction Database)THAP5
DoCM (Curated mutations)THAP5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)THAP5 (select a term)
intoGenTHAP5
Cancer3DTHAP5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612534   
Orphanet
MedgenTHAP5
Genetic Testing Registry THAP5
NextProtQ7Z6K1 [Medical]
TSGene168451
GENETestsTHAP5
Target ValidationTHAP5
Huge Navigator THAP5 [HugePedia]
snp3D : Map Gene to Disease168451
BioCentury BCIQTHAP5
ClinGenTHAP5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD168451
Chemical/Pharm GKB GenePA134905837
Clinical trialTHAP5
Miscellaneous
canSAR (ICR)THAP5 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTHAP5
EVEXTHAP5
GoPubMedTHAP5
iHOPTHAP5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:16:50 CEST 2017

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