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THAP5 (THAP domain containing 5)

Identity

Alias (NCBI)-
HGNC (Hugo) THAP5
HGNC Alias symbDKFZp313O1132
LocusID (NCBI) 168451
Atlas_Id 52110
Location 7q31.1  [Link to chromosome band 7q31]
Location_base_pair Starts at 108562144 and ends at 108569453 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)THAP5   23188
Cards
Entrez_Gene (NCBI)THAP5    THAP domain containing 5
Aliases
GeneCards (Weizmann)THAP5
Ensembl hg19 (Hinxton)ENSG00000177683 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177683 [Gene_View]  ENSG00000177683 [Sequence]  chr7:108562144-108569453 [Contig_View]  THAP5 [Vega]
ICGC DataPortalENSG00000177683
TCGA cBioPortalTHAP5
AceView (NCBI)THAP5
Genatlas (Paris)THAP5
SOURCE (Princeton)THAP5
Genetics Home Reference (NIH)THAP5
Genomic and cartography
GoldenPath hg38 (UCSC)THAP5  -     chr7:108562144-108569453 -  7q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)THAP5  -     7q31.1   [Description]    (hg19-Feb_2009)
GoldenPathTHAP5 - 7q31.1 [CytoView hg19]  THAP5 - 7q31.1 [CytoView hg38]
ImmunoBaseENSG00000177683
Genome Data Viewer NCBITHAP5 [Mapview hg19]  
OMIM612534   
Gene and transcription
Genbank (Entrez)AL833137 AW407519 BC016973 BC040353 BC053634
RefSeq transcript (Entrez)NM_001130475 NM_001287598 NM_001287599 NM_001287601 NM_182529
Consensus coding sequences : CCDS (NCBI)THAP5
Gene ExpressionTHAP5 [ NCBI-GEO ]   THAP5 [ EBI - ARRAY_EXPRESS ]   THAP5 [ SEEK ]   THAP5 [ MEM ]
Gene Expression Viewer (FireBrowse)THAP5 [ Firebrowse - Broad ]
GenevisibleExpression of THAP5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)168451
GTEX Portal (Tissue expression)THAP5
Human Protein AtlasENSG00000177683-THAP5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z6K1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z6K1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z6K1
PhosPhoSitePlusQ7Z6K1
Domaine pattern : Prosite (Expaxy)ZF_THAP (PS50950)   
Domains : Interpro (EBI)THAP_Znf    THAP_Znf_sf   
Domain families : Pfam (Sanger)THAP (PF05485)   
Domain families : Pfam (NCBI)pfam05485   
Domain families : Smart (EMBL)DM3 (SM00692)  THAP (SM00980)  
Conserved Domain (NCBI)THAP5
SuperfamilyQ7Z6K1
AlphaFold pdb e-kbQ7Z6K1   
Human Protein Atlas [tissue]ENSG00000177683-THAP5 [tissue]
HPRD15498
Protein Interaction databases
DIP (DOE-UCLA)Q7Z6K1
IntAct (EBI)Q7Z6K1
BioGRIDTHAP5
STRING (EMBL)THAP5
ZODIACTHAP5
Ontologies - Pathways
QuickGOQ7Z6K1
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  chromatin  protease binding  DNA binding  nucleus  nucleus  nucleoplasm  cell cycle  negative regulation of cell cycle  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  chromatin  protease binding  DNA binding  nucleus  nucleus  nucleoplasm  cell cycle  negative regulation of cell cycle  metal ion binding  
NDEx NetworkTHAP5
Atlas of Cancer Signalling NetworkTHAP5
Wikipedia pathwaysTHAP5
Orthology - Evolution
OrthoDB168451
GeneTree (enSembl)ENSG00000177683
Phylogenetic Trees/Animal Genes : TreeFamTHAP5
Homologs : HomoloGeneTHAP5
Homology/Alignments : Family Browser (UCSC)THAP5
Gene fusions - Rearrangements
Fusion : QuiverTHAP5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTHAP5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)THAP5
dbVarTHAP5
ClinVarTHAP5
MonarchTHAP5
1000_GenomesTHAP5 
Exome Variant ServerTHAP5
GNOMAD BrowserENSG00000177683
Varsome BrowserTHAP5
ACMGTHAP5 variants
VarityQ7Z6K1
Genomic Variants (DGV)THAP5 [DGVbeta]
DECIPHERTHAP5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTHAP5 
Mutations
ICGC Data PortalTHAP5 
TCGA Data PortalTHAP5 
Broad Tumor PortalTHAP5
OASIS PortalTHAP5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTHAP5  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTHAP5
Mutations and Diseases : HGMDTHAP5
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTHAP5
DgiDB (Drug Gene Interaction Database)THAP5
DoCM (Curated mutations)THAP5
CIViC (Clinical Interpretations of Variants in Cancer)THAP5
Cancer3DTHAP5
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612534   
Orphanet
DisGeNETTHAP5
MedgenTHAP5
Genetic Testing Registry THAP5
NextProtQ7Z6K1 [Medical]
GENETestsTHAP5
Target ValidationTHAP5
Huge Navigator THAP5 [HugePedia]
ClinGenTHAP5
Clinical trials, drugs, therapy
MyCancerGenomeTHAP5
Protein Interactions : CTDTHAP5
Pharm GKB GenePA134905837
PharosQ7Z6K1
Clinical trialTHAP5
Miscellaneous
canSAR (ICR)THAP5
HarmonizomeTHAP5
DataMed IndexTHAP5
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTHAP5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:34:59 CEST 2021

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