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THAP6 (THAP domain containing 6)

Identity

Alias (NCBI)-
HGNC (Hugo) THAP6
HGNC Alias symbMGC30052
LocusID (NCBI) 152815
Atlas_Id 74668
Location 4q21.1  [Link to chromosome band 4q21]
Location_base_pair Starts at 75514473 and ends at 75530026 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)THAP6   23189
Cards
Entrez_Gene (NCBI)THAP6    THAP domain containing 6
Aliases
GeneCards (Weizmann)THAP6
Ensembl hg19 (Hinxton)ENSG00000174796 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174796 [Gene_View]  ENSG00000174796 [Sequence]  chr4:75514473-75530026 [Contig_View]  THAP6 [Vega]
ICGC DataPortalENSG00000174796
TCGA cBioPortalTHAP6
AceView (NCBI)THAP6
Genatlas (Paris)THAP6
SOURCE (Princeton)THAP6
Genetics Home Reference (NIH)THAP6
Genomic and cartography
GoldenPath hg38 (UCSC)THAP6  -     chr4:75514473-75530026 +  4q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)THAP6  -     4q21.1   [Description]    (hg19-Feb_2009)
GoldenPathTHAP6 - 4q21.1 [CytoView hg19]  THAP6 - 4q21.1 [CytoView hg38]
ImmunoBaseENSG00000174796
Genome Data Viewer NCBITHAP6 [Mapview hg19]  
OMIM612535   
Gene and transcription
Genbank (Entrez)AI445613 AI743405 AK056959 AK303658 AK308914
RefSeq transcript (Entrez)NM_001317791 NM_144721
Consensus coding sequences : CCDS (NCBI)THAP6
Gene ExpressionTHAP6 [ NCBI-GEO ]   THAP6 [ EBI - ARRAY_EXPRESS ]   THAP6 [ SEEK ]   THAP6 [ MEM ]
Gene Expression Viewer (FireBrowse)THAP6 [ Firebrowse - Broad ]
GenevisibleExpression of THAP6 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)152815
GTEX Portal (Tissue expression)THAP6
Human Protein AtlasENSG00000174796-THAP6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBB0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBB0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBB0
PhosPhoSitePlusQ8TBB0
Domaine pattern : Prosite (Expaxy)ZF_THAP (PS50950)   
Domains : Interpro (EBI)THAP_Znf    THAP_Znf_sf   
Domain families : Pfam (Sanger)THAP (PF05485)   
Domain families : Pfam (NCBI)pfam05485   
Domain families : Smart (EMBL)DM3 (SM00692)  THAP (SM00980)  
Conserved Domain (NCBI)THAP6
SuperfamilyQ8TBB0
AlphaFold pdb e-kbQ8TBB0   
Human Protein Atlas [tissue]ENSG00000174796-THAP6 [tissue]
HPRD15499
Protein Interaction databases
DIP (DOE-UCLA)Q8TBB0
IntAct (EBI)Q8TBB0
BioGRIDTHAP6
STRING (EMBL)THAP6
ZODIACTHAP6
Ontologies - Pathways
QuickGOQ8TBB0
Ontology : AmiGODNA binding  protein binding  microtubule cytoskeleton  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  microtubule cytoskeleton  metal ion binding  
NDEx NetworkTHAP6
Atlas of Cancer Signalling NetworkTHAP6
Wikipedia pathwaysTHAP6
Orthology - Evolution
OrthoDB152815
GeneTree (enSembl)ENSG00000174796
Phylogenetic Trees/Animal Genes : TreeFamTHAP6
Homologs : HomoloGeneTHAP6
Homology/Alignments : Family Browser (UCSC)THAP6
Gene fusions - Rearrangements
Fusion : QuiverTHAP6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTHAP6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)THAP6
dbVarTHAP6
ClinVarTHAP6
MonarchTHAP6
1000_GenomesTHAP6 
Exome Variant ServerTHAP6
GNOMAD BrowserENSG00000174796
Varsome BrowserTHAP6
ACMGTHAP6 variants
VarityQ8TBB0
Genomic Variants (DGV)THAP6 [DGVbeta]
DECIPHERTHAP6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTHAP6 
Mutations
ICGC Data PortalTHAP6 
TCGA Data PortalTHAP6 
Broad Tumor PortalTHAP6
OASIS PortalTHAP6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTHAP6  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTHAP6
Mutations and Diseases : HGMDTHAP6
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTHAP6
DgiDB (Drug Gene Interaction Database)THAP6
DoCM (Curated mutations)THAP6
CIViC (Clinical Interpretations of Variants in Cancer)THAP6
Cancer3DTHAP6
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612535   
Orphanet
DisGeNETTHAP6
MedgenTHAP6
Genetic Testing Registry THAP6
NextProtQ8TBB0 [Medical]
GENETestsTHAP6
Target ValidationTHAP6
Huge Navigator THAP6 [HugePedia]
ClinGenTHAP6
Clinical trials, drugs, therapy
MyCancerGenomeTHAP6
Protein Interactions : CTDTHAP6
Pharm GKB GenePA134873449
PharosQ8TBB0
Clinical trialTHAP6
Miscellaneous
canSAR (ICR)THAP6
HarmonizomeTHAP6
DataMed IndexTHAP6
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTHAP6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:26 CEST 2021

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