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THAP6 (THAP domain containing 6)

Identity

Alias_symbol (synonym)MGC30052
Other alias-
HGNC (Hugo) THAP6
LocusID (NCBI) 152815
Atlas_Id 74668
Location 4q21.1  [Link to chromosome band 4q21]
Location_base_pair Starts at 75514433 and ends at 75530026 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)THAP6   23189
Cards
Entrez_Gene (NCBI)THAP6  152815  THAP domain containing 6
Aliases
GeneCards (Weizmann)THAP6
Ensembl hg19 (Hinxton)ENSG00000174796 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174796 [Gene_View]  chr4:75514433-75530026 [Contig_View]  THAP6 [Vega]
ICGC DataPortalENSG00000174796
TCGA cBioPortalTHAP6
AceView (NCBI)THAP6
Genatlas (Paris)THAP6
WikiGenes152815
SOURCE (Princeton)THAP6
Genetics Home Reference (NIH)THAP6
Genomic and cartography
GoldenPath hg38 (UCSC)THAP6  -     chr4:75514433-75530026 +  4q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)THAP6  -     4q21.1   [Description]    (hg19-Feb_2009)
EnsemblTHAP6 - 4q21.1 [CytoView hg19]  THAP6 - 4q21.1 [CytoView hg38]
Mapping of homologs : NCBITHAP6 [Mapview hg19]  THAP6 [Mapview hg38]
OMIM612535   
Gene and transcription
Genbank (Entrez)AI445613 AI743405 AK056959 AK303658 AK308914
RefSeq transcript (Entrez)NM_001317791 NM_144721
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)THAP6
Cluster EST : UnigeneHs.479971 [ NCBI ]
CGAP (NCI)Hs.479971
Alternative Splicing GalleryENSG00000174796
Gene ExpressionTHAP6 [ NCBI-GEO ]   THAP6 [ EBI - ARRAY_EXPRESS ]   THAP6 [ SEEK ]   THAP6 [ MEM ]
Gene Expression Viewer (FireBrowse)THAP6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)152815
GTEX Portal (Tissue expression)THAP6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBB0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBB0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBB0
Splice isoforms : SwissVarQ8TBB0
PhosPhoSitePlusQ8TBB0
Domaine pattern : Prosite (Expaxy)ZF_THAP (PS50950)   
Domains : Interpro (EBI)Znf_C2CH   
Domain families : Pfam (Sanger)THAP (PF05485)   
Domain families : Pfam (NCBI)pfam05485   
Domain families : Smart (EMBL)DM3 (SM00692)  THAP (SM00980)  
Conserved Domain (NCBI)THAP6
DMDM Disease mutations152815
Blocks (Seattle)THAP6
SuperfamilyQ8TBB0
Human Protein AtlasENSG00000174796
Peptide AtlasQ8TBB0
HPRD15499
IPIIPI00152180   IPI00552789   IPI00963976   IPI00966772   IPI00910815   IPI00965433   IPI00967815   IPI00967032   IPI00965037   IPI00964375   
Protein Interaction databases
DIP (DOE-UCLA)Q8TBB0
IntAct (EBI)Q8TBB0
FunCoupENSG00000174796
BioGRIDTHAP6
STRING (EMBL)THAP6
ZODIACTHAP6
Ontologies - Pathways
QuickGOQ8TBB0
Ontology : AmiGODNA binding  protein binding  microtubule cytoskeleton  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  microtubule cytoskeleton  metal ion binding  
NDEx NetworkTHAP6
Atlas of Cancer Signalling NetworkTHAP6
Wikipedia pathwaysTHAP6
Orthology - Evolution
OrthoDB152815
GeneTree (enSembl)ENSG00000174796
Phylogenetic Trees/Animal Genes : TreeFamTHAP6
HOVERGENQ8TBB0
HOGENOMQ8TBB0
Homologs : HomoloGeneTHAP6
Homology/Alignments : Family Browser (UCSC)THAP6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTHAP6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)THAP6
dbVarTHAP6
ClinVarTHAP6
1000_GenomesTHAP6 
Exome Variant ServerTHAP6
ExAC (Exome Aggregation Consortium)THAP6 (select the gene name)
Genetic variants : HAPMAP152815
Genomic Variants (DGV)THAP6 [DGVbeta]
DECIPHERTHAP6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTHAP6 
Mutations
ICGC Data PortalTHAP6 
TCGA Data PortalTHAP6 
Broad Tumor PortalTHAP6
OASIS PortalTHAP6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTHAP6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTHAP6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch THAP6
DgiDB (Drug Gene Interaction Database)THAP6
DoCM (Curated mutations)THAP6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)THAP6 (select a term)
intoGenTHAP6
Cancer3DTHAP6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612535   
Orphanet
MedgenTHAP6
Genetic Testing Registry THAP6
NextProtQ8TBB0 [Medical]
TSGene152815
GENETestsTHAP6
Target ValidationTHAP6
Huge Navigator THAP6 [HugePedia]
snp3D : Map Gene to Disease152815
BioCentury BCIQTHAP6
ClinGenTHAP6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD152815
Chemical/Pharm GKB GenePA134873449
Clinical trialTHAP6
Miscellaneous
canSAR (ICR)THAP6 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTHAP6
EVEXTHAP6
GoPubMedTHAP6
iHOPTHAP6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:23 CEST 2017

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