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THAP8 (THAP domain containing 8)

Identity

Alias_symbol (synonym)FLJ32891
Other alias-
HGNC (Hugo) THAP8
LocusID (NCBI) 199745
Atlas_Id 74670
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 36034985 and ends at 36054762 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LRP3 (19q13.11) / THAP8 (19q13.12)THAP8 (19q13.12) / WDR62 (19q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)THAP8   23191
Cards
Entrez_Gene (NCBI)THAP8  199745  THAP domain containing 8
Aliases
GeneCards (Weizmann)THAP8
Ensembl hg19 (Hinxton)ENSG00000161277 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000161277 [Gene_View]  chr19:36034985-36054762 [Contig_View]  THAP8 [Vega]
ICGC DataPortalENSG00000161277
TCGA cBioPortalTHAP8
AceView (NCBI)THAP8
Genatlas (Paris)THAP8
WikiGenes199745
SOURCE (Princeton)THAP8
Genetics Home Reference (NIH)THAP8
Genomic and cartography
GoldenPath hg38 (UCSC)THAP8  -     chr19:36034985-36054762 -  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)THAP8  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblTHAP8 - 19q13.12 [CytoView hg19]  THAP8 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBITHAP8 [Mapview hg19]  THAP8 [Mapview hg38]
OMIM612536   
Gene and transcription
Genbank (Entrez)AK057453 AK093048 AK296640 AK297630 BC046207
RefSeq transcript (Entrez)NM_001331102 NM_001331103 NM_001331104 NM_152658
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)THAP8
Cluster EST : UnigeneHs.350209 [ NCBI ]
CGAP (NCI)Hs.350209
Alternative Splicing GalleryENSG00000161277
Gene ExpressionTHAP8 [ NCBI-GEO ]   THAP8 [ EBI - ARRAY_EXPRESS ]   THAP8 [ SEEK ]   THAP8 [ MEM ]
Gene Expression Viewer (FireBrowse)THAP8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)199745
GTEX Portal (Tissue expression)THAP8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NA92   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NA92  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NA92
Splice isoforms : SwissVarQ8NA92
PhosPhoSitePlusQ8NA92
Domaine pattern : Prosite (Expaxy)ZF_THAP (PS50950)   
Domains : Interpro (EBI)THAP8    Znf_C2CH   
Domain families : Pfam (Sanger)THAP (PF05485)   
Domain families : Pfam (NCBI)pfam05485   
Domain families : Smart (EMBL)DM3 (SM00692)  THAP (SM00980)  
Conserved Domain (NCBI)THAP8
DMDM Disease mutations199745
Blocks (Seattle)THAP8
SuperfamilyQ8NA92
Human Protein AtlasENSG00000161277
Peptide AtlasQ8NA92
HPRD15501
IPIIPI00167936   IPI01014297   IPI00974184   
Protein Interaction databases
DIP (DOE-UCLA)Q8NA92
IntAct (EBI)Q8NA92
FunCoupENSG00000161277
BioGRIDTHAP8
STRING (EMBL)THAP8
ZODIACTHAP8
Ontologies - Pathways
QuickGOQ8NA92
Ontology : AmiGODNA binding  protein binding  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  metal ion binding  
NDEx NetworkTHAP8
Atlas of Cancer Signalling NetworkTHAP8
Wikipedia pathwaysTHAP8
Orthology - Evolution
OrthoDB199745
GeneTree (enSembl)ENSG00000161277
Phylogenetic Trees/Animal Genes : TreeFamTHAP8
HOVERGENQ8NA92
HOGENOMQ8NA92
Homologs : HomoloGeneTHAP8
Homology/Alignments : Family Browser (UCSC)THAP8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTHAP8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)THAP8
dbVarTHAP8
ClinVarTHAP8
1000_GenomesTHAP8 
Exome Variant ServerTHAP8
ExAC (Exome Aggregation Consortium)THAP8 (select the gene name)
Genetic variants : HAPMAP199745
Genomic Variants (DGV)THAP8 [DGVbeta]
DECIPHERTHAP8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTHAP8 
Mutations
ICGC Data PortalTHAP8 
TCGA Data PortalTHAP8 
Broad Tumor PortalTHAP8
OASIS PortalTHAP8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTHAP8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTHAP8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch THAP8
DgiDB (Drug Gene Interaction Database)THAP8
DoCM (Curated mutations)THAP8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)THAP8 (select a term)
intoGenTHAP8
Cancer3DTHAP8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612536   
Orphanet
MedgenTHAP8
Genetic Testing Registry THAP8
NextProtQ8NA92 [Medical]
TSGene199745
GENETestsTHAP8
Target ValidationTHAP8
Huge Navigator THAP8 [HugePedia]
snp3D : Map Gene to Disease199745
BioCentury BCIQTHAP8
ClinGenTHAP8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD199745
Chemical/Pharm GKB GenePA134973337
Clinical trialTHAP8
Miscellaneous
canSAR (ICR)THAP8 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTHAP8
EVEXTHAP8
GoPubMedTHAP8
iHOPTHAP8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:45:26 CEST 2017

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