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THAP9 (THAP domain containing 9)

Identity

Alias_symbol (synonym)FLJ34093
Other aliashTh9
HGNC (Hugo) THAP9
LocusID (NCBI) 79725
Atlas_Id 42547
Location 4q21.22  [Link to chromosome band 4q21]
Location_base_pair Starts at 82900650 and ends at 82919969 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)THAP9   23192
Cards
Entrez_Gene (NCBI)THAP9  79725  THAP domain containing 9
AliaseshTh9
GeneCards (Weizmann)THAP9
Ensembl hg19 (Hinxton)ENSG00000168152 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168152 [Gene_View]  chr4:82900650-82919969 [Contig_View]  THAP9 [Vega]
ICGC DataPortalENSG00000168152
TCGA cBioPortalTHAP9
AceView (NCBI)THAP9
Genatlas (Paris)THAP9
WikiGenes79725
SOURCE (Princeton)THAP9
Genetics Home Reference (NIH)THAP9
Genomic and cartography
GoldenPath hg38 (UCSC)THAP9  -     chr4:82900650-82919969 +  4q21.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)THAP9  -     4q21.22   [Description]    (hg19-Feb_2009)
EnsemblTHAP9 - 4q21.22 [CytoView hg19]  THAP9 - 4q21.22 [CytoView hg38]
Mapping of homologs : NCBITHAP9 [Mapview hg19]  THAP9 [Mapview hg38]
OMIM612537   
Gene and transcription
Genbank (Entrez)AA478110 AK026973 AK091412 AK225333 BC131722
RefSeq transcript (Entrez)NM_001317776 NM_024672
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)THAP9
Cluster EST : UnigeneHs.582050 [ NCBI ]
CGAP (NCI)Hs.582050
Alternative Splicing GalleryENSG00000168152
Gene ExpressionTHAP9 [ NCBI-GEO ]   THAP9 [ EBI - ARRAY_EXPRESS ]   THAP9 [ SEEK ]   THAP9 [ MEM ]
Gene Expression Viewer (FireBrowse)THAP9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79725
GTEX Portal (Tissue expression)THAP9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H5L6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H5L6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H5L6
Splice isoforms : SwissVarQ9H5L6
Catalytic activity : Enzyme2.7.7.- [ Enzyme-Expasy ]   2.7.7.-2.7.7.- [ IntEnz-EBI ]   2.7.7.- [ BRENDA ]   2.7.7.- [ KEGG ]   
PhosPhoSitePlusQ9H5L6
Domaine pattern : Prosite (Expaxy)ZF_THAP (PS50950)   
Domains : Interpro (EBI)Transposase_37    Znf_C2CH   
Domain families : Pfam (Sanger)THAP (PF05485)    Tnp_P_element (PF12017)   
Domain families : Pfam (NCBI)pfam05485    pfam12017   
Domain families : Smart (EMBL)DM3 (SM00692)  THAP (SM00980)  
Conserved Domain (NCBI)THAP9
DMDM Disease mutations79725
Blocks (Seattle)THAP9
SuperfamilyQ9H5L6
Human Protein AtlasENSG00000168152
Peptide AtlasQ9H5L6
HPRD15502
IPIIPI00885067   IPI00966112   IPI00967691   IPI00965798   IPI00966611   IPI00965569   
Protein Interaction databases
DIP (DOE-UCLA)Q9H5L6
IntAct (EBI)Q9H5L6
FunCoupENSG00000168152
BioGRIDTHAP9
STRING (EMBL)THAP9
ZODIACTHAP9
Ontologies - Pathways
QuickGOQ9H5L6
Ontology : AmiGOtransposase activity  DNA recombination  transposition, DNA-mediated  DNA integration  transferase activity  sequence-specific DNA binding  metal ion binding  
Ontology : EGO-EBItransposase activity  DNA recombination  transposition, DNA-mediated  DNA integration  transferase activity  sequence-specific DNA binding  metal ion binding  
NDEx NetworkTHAP9
Atlas of Cancer Signalling NetworkTHAP9
Wikipedia pathwaysTHAP9
Orthology - Evolution
OrthoDB79725
GeneTree (enSembl)ENSG00000168152
Phylogenetic Trees/Animal Genes : TreeFamTHAP9
HOVERGENQ9H5L6
HOGENOMQ9H5L6
Homologs : HomoloGeneTHAP9
Homology/Alignments : Family Browser (UCSC)THAP9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTHAP9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)THAP9
dbVarTHAP9
ClinVarTHAP9
1000_GenomesTHAP9 
Exome Variant ServerTHAP9
ExAC (Exome Aggregation Consortium)THAP9 (select the gene name)
Genetic variants : HAPMAP79725
Genomic Variants (DGV)THAP9 [DGVbeta]
DECIPHERTHAP9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTHAP9 
Mutations
ICGC Data PortalTHAP9 
TCGA Data PortalTHAP9 
Broad Tumor PortalTHAP9
OASIS PortalTHAP9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTHAP9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTHAP9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch THAP9
DgiDB (Drug Gene Interaction Database)THAP9
DoCM (Curated mutations)THAP9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)THAP9 (select a term)
intoGenTHAP9
Cancer3DTHAP9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612537   
Orphanet
MedgenTHAP9
Genetic Testing Registry THAP9
NextProtQ9H5L6 [Medical]
TSGene79725
GENETestsTHAP9
Huge Navigator THAP9 [HugePedia]
snp3D : Map Gene to Disease79725
BioCentury BCIQTHAP9
ClinGenTHAP9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79725
Chemical/Pharm GKB GenePA134981371
Clinical trialTHAP9
Miscellaneous
canSAR (ICR)THAP9 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTHAP9
EVEXTHAP9
GoPubMedTHAP9
iHOPTHAP9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:40:54 CEST 2017

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