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THCAT155 (thyroid cancer-associated transcript 155)

Identity

Alias (NCBI)-
HGNC (Hugo) -
LocusID (NCBI) 100129223
Atlas_Id 55290
Location 12p13.32  [Link to chromosome band 12p13]
Location_base_pair Starts at 3483712 and ends at 3492819 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)THCAT155    thyroid cancer-associated transcript 155
Aliases
GeneCards (Weizmann)THCAT155
Ensembl hg19 (Hinxton)ENSG00000287243 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000287243 [Gene_View]  ENSG00000287243 [Sequence]  chr12:3483712-3492819 [Contig_View]  THCAT155 [Vega]
ICGC DataPortalENSG00000287243
TCGA cBioPortalTHCAT155
AceView (NCBI)THCAT155
Genatlas (Paris)THCAT155
SOURCE (Princeton)THCAT155
Genetics Home Reference (NIH)THCAT155
Genomic and cartography
GoldenPath hg38 (UCSC)THCAT155  -     chr12:3483712-3492819 -  12p13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)THCAT155  -     12p13.32   [Description]    (hg19-Feb_2009)
GoldenPathTHCAT155 - 12p13.32 [CytoView hg19]  THCAT155 - 12p13.32 [CytoView hg38]
ImmunoBaseENSG00000287243
Genome Data Viewer NCBITHCAT155 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK125333 BM683352 DA214670
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)THCAT155
Gene ExpressionTHCAT155 [ NCBI-GEO ]   THCAT155 [ EBI - ARRAY_EXPRESS ]   THCAT155 [ SEEK ]   THCAT155 [ MEM ]
Gene Expression Viewer (FireBrowse)THCAT155 [ Firebrowse - Broad ]
GenevisibleExpression of THCAT155 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100129223
GTEX Portal (Tissue expression)THCAT155
Human Protein AtlasENSG00000287243-THCAT155 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZUT4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZUT4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZUT4
PhosPhoSitePlusQ6ZUT4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)THCAT155
SuperfamilyQ6ZUT4
AlphaFold pdb e-kbQ6ZUT4   
Human Protein Atlas [tissue]ENSG00000287243-THCAT155 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q6ZUT4
IntAct (EBI)Q6ZUT4
BioGRIDTHCAT155
STRING (EMBL)THCAT155
ZODIACTHCAT155
Ontologies - Pathways
QuickGOQ6ZUT4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTHCAT155
Atlas of Cancer Signalling NetworkTHCAT155
Wikipedia pathwaysTHCAT155
Orthology - Evolution
OrthoDB100129223
GeneTree (enSembl)ENSG00000287243
Phylogenetic Trees/Animal Genes : TreeFam-
Homologs : HomoloGeneTHCAT155
Homology/Alignments : Family Browser (UCSC)THCAT155
Gene fusions - Rearrangements
Fusion : QuiverTHCAT155
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTHCAT155 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)THCAT155
dbVarTHCAT155
ClinVarTHCAT155
Monarch-
1000_GenomesTHCAT155 
Exome Variant ServerTHCAT155
GNOMAD BrowserENSG00000287243
Varsome BrowserTHCAT155
ACMGTHCAT155 variants
VarityQ6ZUT4
Genomic Variants (DGV)THCAT155 [DGVbeta]
DECIPHERTHCAT155 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTHCAT155 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTHCAT155
DgiDB (Drug Gene Interaction Database)THCAT155
DoCM (Curated mutations)THCAT155
CIViC (Clinical Interpretations of Variants in Cancer)THCAT155
Cancer3DTHCAT155
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTHCAT155
MedgenTHCAT155
Genetic Testing Registry THCAT155
NextProtQ6ZUT4 [Medical]
GENETestsTHCAT155
Target ValidationTHCAT155
Huge Navigator THCAT155 [HugePedia]
ClinGenTHCAT155
Clinical trials, drugs, therapy
MyCancerGenomeTHCAT155
Protein Interactions : CTDTHCAT155
PharosQ6ZUT4
Clinical trialTHCAT155
Miscellaneous
canSAR (ICR)THCAT155
HarmonizomeTHCAT155
DataMed IndexTHCAT155
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTHCAT155
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:35:00 CEST 2021

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