Atlas of Genetics and Cytogenetics in Oncology and Haematology


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THCAT155 (thyroid cancer-associated transcript 155)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100129223
Atlas_Id 55290
Location 12p13.32  [Link to chromosome band 12p13]
Location_base_pair Starts at 3483712 and ends at 3492819 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)THCAT155  100129223  thyroid cancer-associated transcript 155
Aliases
GeneCards (Weizmann)THCAT155
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:3483712-3492819 [Contig_View]  THCAT155 [Vega]
TCGA cBioPortalTHCAT155
AceView (NCBI)THCAT155
Genatlas (Paris)THCAT155
WikiGenes100129223
SOURCE (Princeton)THCAT155
Genetics Home Reference (NIH)THCAT155
Genomic and cartography
GoldenPath hg38 (UCSC)THCAT155  -     chr12:3483712-3492819 -  12p13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)THCAT155  -     12p13.32   [Description]    (hg19-Feb_2009)
EnsemblTHCAT155 - 12p13.32 [CytoView hg19]  THCAT155 - 12p13.32 [CytoView hg38]
Mapping of homologs : NCBITHCAT155 [Mapview hg19]  THCAT155 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125333 BM683352 DA214670
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)THCAT155
Cluster EST : UnigeneHs.586788 [ NCBI ]
CGAP (NCI)Hs.586788
Gene ExpressionTHCAT155 [ NCBI-GEO ]   THCAT155 [ EBI - ARRAY_EXPRESS ]   THCAT155 [ SEEK ]   THCAT155 [ MEM ]
Gene Expression Viewer (FireBrowse)THCAT155 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100129223
GTEX Portal (Tissue expression)THCAT155
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZUT4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZUT4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZUT4
Splice isoforms : SwissVarQ6ZUT4
PhosPhoSitePlusQ6ZUT4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)THCAT155
DMDM Disease mutations100129223
Blocks (Seattle)THCAT155
SuperfamilyQ6ZUT4
Peptide AtlasQ6ZUT4
IPIIPI00445828   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZUT4
IntAct (EBI)Q6ZUT4
BioGRIDTHCAT155
STRING (EMBL)THCAT155
ZODIACTHCAT155
Ontologies - Pathways
QuickGOQ6ZUT4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTHCAT155
Atlas of Cancer Signalling NetworkTHCAT155
Wikipedia pathwaysTHCAT155
Orthology - Evolution
OrthoDB100129223
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ6ZUT4
HOGENOMQ6ZUT4
Homologs : HomoloGeneTHCAT155
Homology/Alignments : Family Browser (UCSC)THCAT155
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTHCAT155 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)THCAT155
dbVarTHCAT155
ClinVarTHCAT155
1000_GenomesTHCAT155 
Exome Variant ServerTHCAT155
ExAC (Exome Aggregation Consortium)THCAT155 (select the gene name)
Genetic variants : HAPMAP100129223
Genomic Variants (DGV)THCAT155 [DGVbeta]
DECIPHERTHCAT155 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTHCAT155 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch THCAT155
DgiDB (Drug Gene Interaction Database)THCAT155
DoCM (Curated mutations)THCAT155 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)THCAT155 (select a term)
intoGenTHCAT155
Cancer3DTHCAT155(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTHCAT155
Genetic Testing Registry THCAT155
NextProtQ6ZUT4 [Medical]
TSGene100129223
GENETestsTHCAT155
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100129223
BioCentury BCIQTHCAT155
ClinGenTHCAT155
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100129223
Clinical trialTHCAT155
Miscellaneous
canSAR (ICR)THCAT155 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineTHCAT155
EVEXTHCAT155
GoPubMedTHCAT155
iHOPTHCAT155
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:40:55 CEST 2017

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