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THEM6 (thioesterase superfamily member 6)

Identity

Alias_namesC8orf55
chromosome 8 open reading frame 55
Alias_symbol (synonym)DSCD75
Other alias
HGNC (Hugo) THEM6
LocusID (NCBI) 51337
Atlas_Id 41179
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 143808621 and ends at 143818350 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZNF204P (6p22.1) / THEM6 (8q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)THEM6   29656
Cards
Entrez_Gene (NCBI)THEM6  51337  thioesterase superfamily member 6
AliasesC8orf55; DSCD75
GeneCards (Weizmann)THEM6
Ensembl hg19 (Hinxton)ENSG00000130193 [Gene_View]  chr8:143808621-143818350 [Contig_View]  THEM6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000130193 [Gene_View]  chr8:143808621-143818350 [Contig_View]  THEM6 [Vega]
ICGC DataPortalENSG00000130193
TCGA cBioPortalTHEM6
AceView (NCBI)THEM6
Genatlas (Paris)THEM6
WikiGenes51337
SOURCE (Princeton)THEM6
Genetics Home Reference (NIH)THEM6
Genomic and cartography
GoldenPath hg19 (UCSC)THEM6  -     chr8:143808621-143818350 +  8q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)THEM6  -     8q24.3   [Description]    (hg38-Dec_2013)
EnsemblTHEM6 - 8q24.3 [CytoView hg19]  THEM6 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBITHEM6 [Mapview hg19]  THEM6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF242773 AK055140 AK075407 AK301564 AK315614
RefSeq transcript (Entrez)NM_016647
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008046 NW_004929340
Consensus coding sequences : CCDS (NCBI)THEM6
Cluster EST : UnigeneHs.368402 [ NCBI ]
CGAP (NCI)Hs.368402
Alternative Splicing GalleryENSG00000130193
Gene ExpressionTHEM6 [ NCBI-GEO ]   THEM6 [ EBI - ARRAY_EXPRESS ]   THEM6 [ SEEK ]   THEM6 [ MEM ]
Gene Expression Viewer (FireBrowse)THEM6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51337
GTEX Portal (Tissue expression)THEM6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WUY1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WUY1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WUY1
Splice isoforms : SwissVarQ8WUY1
PhosPhoSitePlusQ8WUY1
Domains : Interpro (EBI)HotDog_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)THEM6
DMDM Disease mutations51337
Blocks (Seattle)THEM6
SuperfamilyQ8WUY1
Human Protein AtlasENSG00000130193
Peptide AtlasQ8WUY1
HPRD14241
IPIIPI00171421   IPI00791754   IPI00978773   
Protein Interaction databases
DIP (DOE-UCLA)Q8WUY1
IntAct (EBI)Q8WUY1
FunCoupENSG00000130193
BioGRIDTHEM6
STRING (EMBL)THEM6
ZODIACTHEM6
Ontologies - Pathways
QuickGOQ8WUY1
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkTHEM6
Atlas of Cancer Signalling NetworkTHEM6
Wikipedia pathwaysTHEM6
Orthology - Evolution
OrthoDB51337
GeneTree (enSembl)ENSG00000130193
Phylogenetic Trees/Animal Genes : TreeFamTHEM6
HOVERGENQ8WUY1
HOGENOMQ8WUY1
Homologs : HomoloGeneTHEM6
Homology/Alignments : Family Browser (UCSC)THEM6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTHEM6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)THEM6
dbVarTHEM6
ClinVarTHEM6
1000_GenomesTHEM6 
Exome Variant ServerTHEM6
ExAC (Exome Aggregation Consortium)THEM6 (select the gene name)
Genetic variants : HAPMAP51337
Genomic Variants (DGV)THEM6 [DGVbeta]
DECIPHER (Syndromes)8:143808621-143818350  ENSG00000130193
CONAN: Copy Number AnalysisTHEM6 
Mutations
ICGC Data PortalTHEM6 
TCGA Data PortalTHEM6 
Broad Tumor PortalTHEM6
OASIS PortalTHEM6 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTHEM6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch THEM6
DgiDB (Drug Gene Interaction Database)THEM6
DoCM (Curated mutations)THEM6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)THEM6 (select a term)
intoGenTHEM6
Cancer3DTHEM6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTHEM6
Genetic Testing Registry THEM6
NextProtQ8WUY1 [Medical]
TSGene51337
GENETestsTHEM6
Huge Navigator THEM6 [HugePedia]
snp3D : Map Gene to Disease51337
BioCentury BCIQTHEM6
ClinGenTHEM6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51337
Chemical/Pharm GKB GenePA142672318
Clinical trialTHEM6
Miscellaneous
canSAR (ICR)THEM6 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTHEM6
EVEXTHEM6
GoPubMedTHEM6
iHOPTHEM6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Mar 30 15:22:23 CEST 2017

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